Literature DB >> 16851715

Dynamics of water trapped between hydrophobic solutes.

Niharendu Choudhury1, B Montgomery Pettitt.   

Abstract

We describe the model dynamical behavior of the solvent between two nanoscopic hydrophobic solutes. The dynamics of the vicinal water in various sized traps is found to be significantly different from bulk behavior. We consider the dynamics at normal temperature and pressure at three intersolute distances corresponding to the three solvent separated minima in the free energy profile between the solutes with attractions. These three states correspond to one, two, and three intervening layers of water molecules. Results are obtained from a molecular dynamics simulation at constant temperature and pressure (NPT) ensemble. Translational diffusion of water molecules trapped between the two solutes has been analyzed from the velocity correlation function as well as from the mean square displacement of the water molecules. The rotational behavior has been analyzed through the reorientational dynamics of the dipole moment vector of the water molecule by calculating both first and second rank dipole-dipole correlation functions. Both the translational and reorientational mobilities of water are found to be much slower at the smaller separation and increases as the separation between solutes becomes larger. The occupation time distribution functions calculated from the trajectories also show that the relaxation is much slower for the smallest intersolute separation as compared to other wider separations. The sublinear trend in mean square displacement and the stretched exponential decay of the relaxation of dipolar correlation and occupation distribution function indicate that the dynamical behavior of water in the confined region between two large hydrophobic solutes departs from usual Brownian behavior. This behavior is reminiscent of the behavior of water in the vicinity of protein surface clefts or trapped between two domains of a protein.

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Year:  2005        PMID: 16851715     DOI: 10.1021/jp045439i

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  16 in total

1.  Behavior of water in contact with model hydrophobic cavities and tunnels and carbon nanotubes.

Authors:  E P Schulz; L M Alarcón; G A Appignanesi
Journal:  Eur Phys J E Soft Matter       Date:  2011-10-24       Impact factor: 1.890

2.  Structural and dynamical aspects of water in contact with a hydrophobic surface.

Authors:  D C Malaspina; E P Schulz; L M Alarcón; M A Frechero; G A Appignanesi
Journal:  Eur Phys J E Soft Matter       Date:  2010-05-22       Impact factor: 1.890

3.  Enthalpy-entropy contributions to the potential of mean force of nanoscopic hydrophobic solutes.

Authors:  Niharendu Choudhury; B Montgomery Pettitt
Journal:  J Phys Chem B       Date:  2006-04-27       Impact factor: 2.991

4.  Structural Relaxation Processes and Collective Dynamics of Water in Biomolecular Environments.

Authors:  Sara Capponi; Stephen H White; Douglas J Tobias; Matthias Heyden
Journal:  J Phys Chem B       Date:  2019-01-02       Impact factor: 2.991

5.  Free Energy Calculations Based on Coupling Proximal Distribution Functions and Thermodynamic Cycles.

Authors:  Shu-Ching Ou; B Montgomery Pettitt
Journal:  J Chem Theory Comput       Date:  2019-03-06       Impact factor: 6.006

6.  Examining the origins of the hydration force between lipid bilayers using all-atom simulations.

Authors:  Anastasia N Gentilcore; Naveen Michaud-Agrawal; Paul S Crozier; Mark J Stevens; Thomas B Woolf
Journal:  J Membr Biol       Date:  2010-04-13       Impact factor: 1.843

7.  Structure and dynamics of high- and low-density water molecules in the liquid and supercooled regimes.

Authors:  Joan Manuel Montes de Oca; J Ariel Rodriguez Fris; Sebastián R Accordino; David C Malaspina; Gustavo A Appignanesi
Journal:  Eur Phys J E Soft Matter       Date:  2016-12-15       Impact factor: 1.890

8.  Studies on electrostatic interactions within model nano-confined aqueous environments of different chemical nature.

Authors:  Joan Manuel Montes de Oca; Cintia A Menéndez; Sebastián R Accordino; David C Malaspina; Gustavo A Appignanesi
Journal:  Eur Phys J E Soft Matter       Date:  2017-09-20       Impact factor: 1.890

9.  Determination of the transition-state entropy for aggregation suggests how the growth of sickle cell hemoglobin polymers can be slowed.

Authors:  Peter G Vekilov; Oleg Galkin; B Montgomery Pettitt; Nihar Choudhury; Ronald L Nagel
Journal:  J Mol Biol       Date:  2008-01-16       Impact factor: 5.469

10.  An Integral Equation Study of the Hydrophobic Interaction between Graphene Plates.

Authors:  Jesse J Howard; John S Perkyns; Niharendu Choudhury; B Montgomery Pettitt
Journal:  J Chem Theory Comput       Date:  2008       Impact factor: 6.006

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