Literature DB >> 16849698

MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology.

Dasaradhi Palakodeti1, Magda Smielewska, Brenton R Graveley.   

Abstract

MicroRNAs (miRNAs) are approximately 22-nt RNA molecules that typically bind to the 3' untranslated regions of target mRNAs and function to either induce mRNA degradation or repress translation. miRNAs have been shown to play important roles in the function of stem cells and cell lineage decisions in a variety of organisms, including humans. Planarians are bilaterally symmetric metazoans that have the unique ability to completely regenerate lost tissues or organs. This regenerative capacity is facilitated by a population of stem cells known as neoblasts. Planarians are therefore an excellent model system for studying many aspects of stem cell biology. Here we report the cloning and initial characterization of 71 miRNAs from the planarian Schmidtea mediterranea. While several of the S. mediterranea miRNAs are members of miRNA families identified in other species, we also identified a number of planarian-specific miRNAs. This work lays the foundation for functional studies aimed at addressing the role of these miRNAs in regeneration, cell lineage decisions, and basic stem cell biology.

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Year:  2006        PMID: 16849698      PMCID: PMC1557691          DOI: 10.1261/rna.117206

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  53 in total

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2.  Identification of novel genes coding for small expressed RNAs.

Authors:  M Lagos-Quintana; R Rauhut; W Lendeckel; T Tuschl
Journal:  Science       Date:  2001-10-26       Impact factor: 47.728

3.  The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans.

Authors:  B J Reinhart; F J Slack; M Basson; A E Pasquinelli; J C Bettinger; A E Rougvie; H R Horvitz; G Ruvkun
Journal:  Nature       Date:  2000-02-24       Impact factor: 49.962

4.  SMEDWI-2 is a PIWI-like protein that regulates planarian stem cells.

Authors:  Peter W Reddien; Néstor J Oviedo; Joya R Jennings; James C Jenkin; Alejandro Sánchez Alvarado
Journal:  Science       Date:  2005-11-25       Impact factor: 47.728

5.  Animal evolution and the molecular signature of radiations compressed in time.

Authors:  Antonis Rokas; Dirk Krüger; Sean B Carroll
Journal:  Science       Date:  2005-12-23       Impact factor: 47.728

6.  An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans.

Authors:  N C Lau; L P Lim; E G Weinstein; D P Bartel
Journal:  Science       Date:  2001-10-26       Impact factor: 47.728

7.  An extensive class of small RNAs in Caenorhabditis elegans.

Authors:  R C Lee; V Ambros
Journal:  Science       Date:  2001-10-26       Impact factor: 47.728

8.  Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA.

Authors:  A E Pasquinelli; B J Reinhart; F Slack; M Q Martindale; M I Kuroda; B Maller; D C Hayward; E E Ball; B Degnan; P Müller; J Spring; A Srinivasan; M Fishman; J Finnerty; J Corbo; M Levine; P Leahy; E Davidson; G Ruvkun
Journal:  Nature       Date:  2000-11-02       Impact factor: 49.962

9.  Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs.

Authors:  Antonio J Giraldez; Yuichiro Mishima; Jason Rihel; Russell J Grocock; Stijn Van Dongen; Kunio Inoue; Anton J Enright; Alexander F Schier
Journal:  Science       Date:  2006-02-16       Impact factor: 47.728

10.  miRBase: microRNA sequences, targets and gene nomenclature.

Authors:  Sam Griffiths-Jones; Russell J Grocock; Stijn van Dongen; Alex Bateman; Anton J Enright
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

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  39 in total

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Authors:  Thomas Andl
Journal:  Organogenesis       Date:  2007-01       Impact factor: 2.500

2.  Computational identification and evolutionary relationships of the microRNA gene cluster miR-71/2 in protostomes.

Authors:  Matheus de Souza Gomes; Mark T A Donoghue; Mohankumar Muniyappa; Roberta Verciano Pereira; Renata Guerra-Sá; Charles Spillane
Journal:  J Mol Evol       Date:  2013-06-06       Impact factor: 2.395

3.  High-resolution profiling and discovery of planarian small RNAs.

Authors:  Marc R Friedländer; Catherine Adamidi; Ting Han; Svetlana Lebedeva; Thomas A Isenbarger; Martin Hirst; Marco Marra; Chad Nusbaum; William L Lee; James C Jenkin; Alejandro Sánchez Alvarado; John K Kim; Nikolaus Rajewsky
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-29       Impact factor: 11.205

4.  Differential expression of microRNA patterns in planarian normal and regenerative tissues.

Authors:  Qing-Nan Tian; Zhen-Xia Bao; Ping Lu; Yun-Fei Qin; San-Jun Chen; Feng Liang; Jia Mai; Jin-Mei Zhao; Zhao-Yu Zhu; Yi-Zhe Zhang; Shou-Tao Zhang
Journal:  Mol Biol Rep       Date:  2011-06-29       Impact factor: 2.316

5.  Deep sequencing reveals unique small RNA repertoire that is regulated during head regeneration in Hydra magnipapillata.

Authors:  Srikar Krishna; Aparna Nair; Sirisha Cheedipudi; Deepak Poduval; Jyotsna Dhawan; Dasaradhi Palakodeti; Yashoda Ghanekar
Journal:  Nucleic Acids Res       Date:  2012-11-19       Impact factor: 16.971

6.  The PIWI proteins SMEDWI-2 and SMEDWI-3 are required for stem cell function and piRNA expression in planarians.

Authors:  Dasaradhi Palakodeti; Magda Smielewska; Yi-Chien Lu; Gene W Yeo; Brenton R Graveley
Journal:  RNA       Date:  2008-05-02       Impact factor: 4.942

7.  An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum.

Authors:  Zhangxun Wang; Xiangyang Xue; Jun Sun; Rong Luo; Xindong Xu; Yanyan Jiang; Qingfeng Zhang; Weiqing Pan
Journal:  PLoS Negl Trop Dis       Date:  2010-02-09

8.  The microRNA miR-124 controls gene expression in the sensory nervous system of Caenorhabditis elegans.

Authors:  Alejandra M Clark; Leonard D Goldstein; Maya Tevlin; Simon Tavaré; Shai Shaham; Eric A Miska
Journal:  Nucleic Acids Res       Date:  2010-02-21       Impact factor: 16.971

9.  Homology-based annotation of non-coding RNAs in the genomes of Schistosoma mansoni and Schistosoma japonicum.

Authors:  Claudia S Copeland; Manja Marz; Dominic Rose; Jana Hertel; Paul J Brindley; Clara Bermudez Santana; Stephanie Kehr; Camille Stephan-Otto Attolini; Peter F Stadler
Journal:  BMC Genomics       Date:  2009-10-08       Impact factor: 3.969

10.  Identification and characterization of microRNAs and endogenous siRNAs in Schistosoma japonicum.

Authors:  Lili Hao; Pengfei Cai; Ning Jiang; Heng Wang; Qijun Chen
Journal:  BMC Genomics       Date:  2010-01-21       Impact factor: 3.969

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