Literature DB >> 16848605

On the driving forces for protein-protein association.

Arieh Ben-Naim1.   

Abstract

We analyze all the contributions to the standard free energy of association between two proteins. We find that the solvent-induced interactions between two (or more) hydrophilic groups can turn a highly unfavorable process of association into a highly favorable one. We therefore argue that in contrast to the generally accepted view, it is the hydrophilic rather than the hydrophobic effect that is dominant in biochemical processes such as protein-protein association, protein folding, and protein binding to DNA.

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Year:  2006        PMID: 16848605     DOI: 10.1063/1.2205860

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  11 in total

1.  Characterization of protein-protein interfaces.

Authors:  Changhui Yan; Feihong Wu; Robert L Jernigan; Drena Dobbs; Vasant Honavar
Journal:  Protein J       Date:  2008-01       Impact factor: 2.371

2.  Analysis of oligomeric proteins during unfolding by pH and temperature.

Authors:  Pradip Bhattacharya; Tamil Ganeshan; Soumiyadeep Nandi; Alok Srivastava; Prashant Singh; Mohommad Rehan; Reshmi Rashkush; Naidu Subbarao; Andrew Lynn
Journal:  J Mol Model       Date:  2009-02-11       Impact factor: 1.810

3.  Exploring the Free-Energy Landscape and Thermodynamics of Protein-Protein Association.

Authors:  Celine Tse; Lauren Wickstrom; Mamuka Kvaratskhelia; Emilio Gallicchio; Ronald Levy; Nanjie Deng
Journal:  Biophys J       Date:  2020-08-12       Impact factor: 4.033

4.  Evidence for water structuring forces between surfaces.

Authors:  Christopher Stanley; Donald C Rau
Journal:  Curr Opin Colloid Interface Sci       Date:  2011-12       Impact factor: 6.448

5.  Aggregation of poly(acrylic acid)-containing elastin-mimetic copolymers.

Authors:  Bradford A Paik; Marco A Blanco; Xinqiao Jia; Christopher J Roberts; Kristi L Kiick
Journal:  Soft Matter       Date:  2015-03-07       Impact factor: 3.679

6.  Exploring the molecular design of protein interaction sites with molecular dynamics simulations and free energy calculations.

Authors:  Shide Liang; Liwei Li; Wei-Lun Hsu; Meaghan N Pilcher; Vladimir Uversky; Yaoqi Zhou; A Keith Dunker; Samy O Meroueh
Journal:  Biochemistry       Date:  2009-01-20       Impact factor: 3.162

7.  Evaluating the Effects of Hinge Flexibility on the Solution Structure of Antibodies at Concentrated Conditions.

Authors:  Marco A Blanco; Harold W Hatch; Joseph E Curtis; Vincent K Shen
Journal:  J Pharm Sci       Date:  2018-12-26       Impact factor: 3.534

8.  Thermodynamics and Free Energy Landscape of BAR-Domain Dimerization from Molecular Simulations.

Authors:  Adip Jhaveri; Dhruw Maisuria; Matthew Varga; Dariush Mohammadyani; Margaret E Johnson
Journal:  J Phys Chem B       Date:  2021-04-07       Impact factor: 2.991

9.  Unbiased Atomistic Insight into the Mechanisms and Solvent Role for Globular Protein Dimer Dissociation.

Authors:  Z F Brotzakis; P G Bolhuis
Journal:  J Phys Chem B       Date:  2019-02-27       Impact factor: 2.991

10.  Evidence for water-tuned structural differences in proteins: an approach emphasizing variations in local hydrophilicity.

Authors:  Yasar Akdogan; Jörg Reichenwallner; Dariush Hinderberger
Journal:  PLoS One       Date:  2012-09-25       Impact factor: 3.240

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