Literature DB >> 27759897

Effect of circular permutation on the structure and function of type 1 blue copper center in azurin.

Yang Yu1, Igor D Petrik2, Kelly N Chacón3, Parisa Hosseinzadeh4, Honghui Chen1,5, Ninian J Blackburn6, Yi Lu2,4.   

Abstract

Type 1 copper (T1Cu) proteins are electron transfer (ET) proteins involved in many important biological processes. While the effects of changing primary and secondary coordination spheres in the T1Cu ET function have been extensively studied, few report has explored the effect of the overall protein structural perturbation on active site configuration or reduction potential of the protein, even though the protein scaffold has been proposed to play a critical role in enforcing the entatic or "rack-induced" state for ET functions. We herein report circular permutation of azurin by linking the N- and C-termini and creating new termini in the loops between 1st and 2nd β strands or between 3rd and 4th β strands. Characterization by electronic absorption, electron paramagnetic spectroscopies, as well as crystallography and cyclic voltammetry revealed that, while the overall structure and the primary coordination sphere of the circular permutated azurins remain the same as those of native azurin, their reduction potentials increased by 18 and 124 mV over that of WTAz. Such increases in reduction potentials can be attributed to subtle differences in the hydrogen-bonding network in secondary coordination sphere around the T1Cu center.
© 2016 The Protein Society.

Entities:  

Keywords:  azurin; circular permutation; reduction potential; secondary coordination sphere

Mesh:

Substances:

Year:  2016        PMID: 27759897      PMCID: PMC5275729          DOI: 10.1002/pro.3071

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  38 in total

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Journal:  Biochemistry       Date:  2003-07-29       Impact factor: 3.162

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Review 4.  Spectroscopic methods in bioinorganic chemistry: blue to green to red copper sites.

Authors:  Edward I Solomon
Journal:  Inorg Chem       Date:  2006-10-02       Impact factor: 5.165

5.  The role of hydrogen bonding at the active site of a cupredoxin: the Phe114Pro azurin variant.

Authors:  Sachiko Yanagisawa; Mark J Banfield; Christopher Dennison
Journal:  Biochemistry       Date:  2006-07-25       Impact factor: 3.162

6.  Basic requirements for a metal-binding site in a protein: the influence of loop shortening on the cupredoxin azurin.

Authors:  Chan Li; Sachiko Yanagisawa; Berta M Martins; Albrecht Messerschmidt; Mark J Banfield; Christopher Dennison
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-01       Impact factor: 11.205

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Journal:  Adv Protein Chem       Date:  1991

Review 8.  Rack-induced bonding in blue-copper proteins.

Authors:  B G Malmström
Journal:  Eur J Biochem       Date:  1994-08-01

9.  Construction and characterization of an azurin analog for the purple copper site in cytochrome c oxidase.

Authors:  M Hay; J H Richards; Y Lu
Journal:  Proc Natl Acad Sci U S A       Date:  1996-01-09       Impact factor: 11.205

10.  Engineering copper sites in proteins: loops confer native structures and properties to chimeric cupredoxins.

Authors:  Chan Li; Mark J Banfield; Christopher Dennison
Journal:  J Am Chem Soc       Date:  2007-01-24       Impact factor: 15.419

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  4 in total

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Journal:  ACS Cent Sci       Date:  2019-01-07       Impact factor: 14.553

3.  CuA-based chimeric T1 copper sites allow for independent modulation of reorganization energy and reduction potential.

Authors:  Jonathan Szuster; Ulises A Zitare; María A Castro; Alcides J Leguto; Marcos N Morgada; Alejandro J Vila; Daniel H Murgida
Journal:  Chem Sci       Date:  2020-06-01       Impact factor: 9.825

4.  Investigating the Effect of Chain Connectivity on the Folding of a Beta-Sheet Protein On and Off the Ribosome.

Authors:  Andrew P Marsden; Jeffrey J Hollins; Charles O'Neill; Pavel Ryzhov; Sally Higson; Carolina A T F Mendonça; Tristan O Kwan; Lee Gyan Kwa; Annette Steward; Jane Clarke
Journal:  J Mol Biol       Date:  2018-10-23       Impact factor: 5.469

  4 in total

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