Literature DB >> 16845271

Predictive testing for complex diseases using multiple genes: fact or fiction?

A Cecile J W Janssens1, Yurii S Aulchenko, Stefano Elefante, Gerard J J M Borsboom, Ewout W Steyerberg, Cornelia M van Duijn.   

Abstract

PURPOSE: There is ongoing debate about whether testing low-risk genes at multiple loci will be useful in clinical care and public health. We investigated the usefulness of multiple genetic testing using simulated data.
METHODS: Usefulness was evaluated by the area under the receiver-operating characteristic curve (AUC), which indicates the accuracy of genetic profiling in discriminating between future patients and nonpatients. The AUC was investigated in relation to the number of genes assumed to be involved, the risk allele frequency, the odds ratio of the risk genotypes, and to the proportion of variance explained by genetic factors as an approximation of the heritability of the disease.
RESULTS: We demonstrated that a high (AUC > 0.80) to excellent discriminative accuracy (AUC > 0.95) can be obtained by simultaneously testing multiple susceptibility genes. A higher discriminative accuracy is obtained when genetic factors play a larger role in the disease, as indicated by the proportion of explained variance. The maximum discriminative accuracy of future genetic profiling can be estimated at present from the heritability and prevalence of disease.
CONCLUSIONS: Genetic profiling may have the potential to identify individuals at higher risk of disease depending on the prevalence and heritability of the disease.

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Mesh:

Year:  2006        PMID: 16845271     DOI: 10.1097/01.gim.0000229689.18263.f4

Source DB:  PubMed          Journal:  Genet Med        ISSN: 1098-3600            Impact factor:   8.822


  98 in total

1.  Analytical and simulation methods for estimating the potential predictive ability of genetic profiling: a comparison of methods and results.

Authors:  Suman Kundu; Lennart C Karssen; A Cecile J W Janssens
Journal:  Eur J Hum Genet       Date:  2012-05-30       Impact factor: 4.246

2.  Evaluation of genetic risk scores for prediction of dichotomous outcomes.

Authors:  Wonsuk Yoo; Selina A Smith; Steven S Coughlin
Journal:  Int J Mol Epidemiol Genet       Date:  2015-09-09

Review 3.  Complex Trait Prediction from Genome Data: Contrasting EBV in Livestock to PRS in Humans: Genomic Prediction.

Authors:  Naomi R Wray; Kathryn E Kemper; Benjamin J Hayes; Michael E Goddard; Peter M Visscher
Journal:  Genetics       Date:  2019-04       Impact factor: 4.562

4.  A critical appraisal of the scientific basis of commercial genomic profiles used to assess health risks and personalize health interventions.

Authors:  A Cecile J W Janssens; Marta Gwinn; Linda A Bradley; Ben A Oostra; Cornelia M van Duijn; Muin J Khoury
Journal:  Am J Hum Genet       Date:  2008-03       Impact factor: 11.025

Review 5.  Beyond odds ratios--communicating disease risk based on genetic profiles.

Authors:  Peter Kraft; Sholom Wacholder; Marilyn C Cornelis; Frank B Hu; Richard B Hayes; Gilles Thomas; Robert Hoover; David J Hunter; Stephen Chanock
Journal:  Nat Rev Genet       Date:  2009-04       Impact factor: 53.242

6.  Is the time right for translation research in genomics?

Authors:  A Cecile J W Janssens
Journal:  Eur J Epidemiol       Date:  2008       Impact factor: 8.082

7.  Prediction of individual genetic risk to disease from genome-wide association studies.

Authors:  Naomi R Wray; Michael E Goddard; Peter M Visscher
Journal:  Genome Res       Date:  2007-09-04       Impact factor: 9.043

8.  Estimation of absolute risk for prostate cancer using genetic markers and family history.

Authors:  Jianfeng Xu; Jielin Sun; A Karim Kader; Sara Lindström; Fredrik Wiklund; Fang-Chi Hsu; Jan-Erik Johansson; S Lilly Zheng; Gilles Thomas; Richard B Hayes; Peter Kraft; David J Hunter; Stephen J Chanock; William B Isaacs; Henrik Grönberg
Journal:  Prostate       Date:  2009-10-01       Impact factor: 4.104

Review 9.  Radiogenomics: Identification of Genomic Predictors for Radiation Toxicity.

Authors:  Barry S Rosenstein
Journal:  Semin Radiat Oncol       Date:  2017-10       Impact factor: 5.934

Review 10.  The Prediction of Radiotherapy Toxicity Using Single Nucleotide Polymorphism-Based Models: A Step Toward Prevention.

Authors:  Sarah L Kerns; Suman Kundu; Jung Hun Oh; Sandeep K Singhal; Michelle Janelsins; Lois B Travis; Joseph O Deasy; A Cecile J E Janssens; Harry Ostrer; Matthew Parliament; Nawaid Usmani; Barry S Rosenstein
Journal:  Semin Radiat Oncol       Date:  2015-05-15       Impact factor: 5.934

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