Literature DB >> 16840341

Characterization of the archaeal thermophile Sulfolobus turreted icosahedral virus validates an evolutionary link among double-stranded DNA viruses from all domains of life.

Walid S A Maaty1, Alice C Ortmann, Mensur Dlakić, Katie Schulstad, Jonathan K Hilmer, Lars Liepold, Blake Weidenheft, Reza Khayat, Trevor Douglas, Mark J Young, Brian Bothner.   

Abstract

Icosahedral nontailed double-stranded DNA (dsDNA) viruses are present in all three domains of life, leading to speculation about a common viral ancestor that predates the divergence of Eukarya, Bacteria, and Archaea. This suggestion is supported by the shared general architecture of this group of viruses and the common fold of their major capsid protein. However, limited information on the diversity and replication of archaeal viruses, in general, has hampered further analysis. Sulfolobus turreted icosahedral virus (STIV), isolated from a hot spring in Yellowstone National Park, was the first icosahedral virus with an archaeal host to be described. Here we present a detailed characterization of the components forming this unusual virus. Using a proteomics-based approach, we identified nine viral and two host proteins from purified STIV particles. Interestingly, one of the viral proteins originates from a reading frame lacking a consensus start site. The major capsid protein (B345) was found to be glycosylated, implying a strong similarity to proteins from other dsDNA viruses. Sequence analysis and structural predication of virion-associated viral proteins suggest that they may have roles in DNA packaging, penton formation, and protein-protein interaction. The presence of an internal lipid layer containing acidic tetraether lipids has also been confirmed. The previously presented structural models in conjunction with the protein, lipid, and carbohydrate information reported here reveal that STIV is strikingly similar to viruses associated with the Bacteria and Eukarya domains of life, further strengthening the hypothesis for a common ancestor of this group of dsDNA viruses from all domains of life.

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Year:  2006        PMID: 16840341      PMCID: PMC1563717          DOI: 10.1128/JVI.00522-06

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  51 in total

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Review 2.  Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements.

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Review 4.  Genetic code: introducing pyrrolysine.

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Authors:  Michael C Merckel; Juha T Huiskonen; Dennis H Bamford; Adrian Goldman; Roman Tuma
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6.  The genome of swinepox virus.

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7.  Analysis of intact tetraether lipids in archaeal cell material and sediments by high performance liquid chromatography/atmospheric pressure chemical ionization mass spectrometry.

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Review 8.  Giant viruses infecting algae.

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9.  Facile distinction of neutral and acidic tetraether lipids in archaea membrane by halogen atom adduct ions in electrospray ionization mass spectrometry.

Authors:  Tatsushi Murae; Yuichiro Takamatsu; Ryohei Muraoka; Satoshi Endoh; Noriaki Yamauchi
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10.  A new UAG-encoded residue in the structure of a methanogen methyltransferase.

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  46 in total

1.  New virus isolates from Italian hydrothermal environments underscore the biogeographic pattern in archaeal virus communities.

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Journal:  J Virol       Date:  2008-08-13       Impact factor: 5.103

Review 3.  Structural and functional studies of archaeal viruses.

Authors:  C Martin Lawrence; Smita Menon; Brian J Eilers; Brian Bothner; Reza Khayat; Trevor Douglas; Mark J Young
Journal:  J Biol Chem       Date:  2009-01-21       Impact factor: 5.157

4.  Sequence and structural characterization of great salt lake bacteriophage CW02, a member of the T7-like supergroup.

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Journal:  J Virol       Date:  2012-05-16       Impact factor: 5.103

5.  Functional interplay between a virus and the ESCRT machinery in archaea.

Authors:  Jamie C Snyder; Rachel Y Samson; Susan K Brumfield; Stephen D Bell; Mark J Young
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6.  The structure of the NTPase that powers DNA packaging into Sulfolobus turreted icosahedral virus 2.

Authors:  Lotta J Happonen; Esko Oksanen; Lassi Liljeroos; Adrian Goldman; Tommi Kajander; Sarah J Butcher
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7.  Novel Sulfolobus Virus with an Exceptional Capsid Architecture.

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8.  Insights into a viral lytic pathway from an archaeal virus-host system.

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9.  Genetic studies on the virus-like regions in the genome of hyperthermophilic archaeon, Thermococcus kodakarensis.

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10.  Atomic structure of the 75 MDa extremophile Sulfolobus turreted icosahedral virus determined by CryoEM and X-ray crystallography.

Authors:  David Veesler; Thiam-Seng Ng; Anoop K Sendamarai; Brian J Eilers; C Martin Lawrence; Shee-Mei Lok; Mark J Young; John E Johnson; Chi-yu Fu
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-21       Impact factor: 11.205

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