Literature DB >> 23520050

Atomic structure of the 75 MDa extremophile Sulfolobus turreted icosahedral virus determined by CryoEM and X-ray crystallography.

David Veesler1, Thiam-Seng Ng, Anoop K Sendamarai, Brian J Eilers, C Martin Lawrence, Shee-Mei Lok, Mark J Young, John E Johnson, Chi-yu Fu.   

Abstract

Sulfolobus turreted icosahedral virus (STIV) was isolated in acidic hot springs where it infects the archeon Sulfolobus solfataricus. We determined the STIV structure using near-atomic resolution electron microscopy and X-ray crystallography allowing tracing of structural polypeptide chains and visualization of transmembrane proteins embedded in the viral membrane. We propose that the vertex complexes orchestrate virion assembly by coordinating interactions of the membrane and various protein components involved. STIV shares the same coat subunit and penton base protein folds as some eukaryotic and bacterial viruses, suggesting that they derive from a common ancestor predating the divergence of the three kingdoms of life. One architectural motif (β-jelly roll fold) forms virtually the entire capsid (distributed in three different gene products), indicating that a single ancestral protein module may have been at the origin of its evolution.

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Year:  2013        PMID: 23520050      PMCID: PMC3619359          DOI: 10.1073/pnas.1300601110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  44 in total

Review 1.  Structural and functional studies of archaeal viruses.

Authors:  C Martin Lawrence; Smita Menon; Brian J Eilers; Brian Bothner; Reza Khayat; Trevor Douglas; Mark J Young
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2.  Salt bridges in the hyperthermophilic protein Ssh10b are resilient to temperature increases.

Authors:  Meng Ge; Xia-Yu Xia; Xian-Ming Pan
Journal:  J Biol Chem       Date:  2008-09-08       Impact factor: 5.157

Review 3.  Advances in understanding archaea-virus interactions in controlled and natural environments.

Authors:  Jamie C Snyder; Mark J Young
Journal:  Curr Opin Microbiol       Date:  2011-08-05       Impact factor: 7.934

4.  The architecture and chemical stability of the archaeal Sulfolobus turreted icosahedral virus.

Authors:  Reza Khayat; Chi-yu Fu; Alice C Ortmann; Mark J Young; John E Johnson
Journal:  J Virol       Date:  2010-06-30       Impact factor: 5.103

5.  In vivo assembly of an archaeal virus studied with whole-cell electron cryotomography.

Authors:  Chi-Yu Fu; Kang Wang; Lu Gan; Jason Lanman; Reza Khayat; Mark J Young; Grant J Jensen; Peter C Doerschuk; John E Johnson
Journal:  Structure       Date:  2010-12-08       Impact factor: 5.006

6.  Crystal structure of human adenovirus at 3.5 A resolution.

Authors:  Vijay S Reddy; S Kundhavai Natchiar; Phoebe L Stewart; Glen R Nemerow
Journal:  Science       Date:  2010-08-27       Impact factor: 47.728

7.  Dali server: conservation mapping in 3D.

Authors:  Liisa Holm; Päivi Rosenström
Journal:  Nucleic Acids Res       Date:  2010-05-10       Impact factor: 16.971

8.  Particle assembly and ultrastructural features associated with replication of the lytic archaeal virus sulfolobus turreted icosahedral virus.

Authors:  Susan K Brumfield; Alice C Ortmann; Vincent Ruigrok; Peter Suci; Trevor Douglas; Mark J Young
Journal:  J Virol       Date:  2009-04-08       Impact factor: 5.103

9.  Appion: an integrated, database-driven pipeline to facilitate EM image processing.

Authors:  Gabriel C Lander; Scott M Stagg; Neil R Voss; Anchi Cheng; Denis Fellmann; James Pulokas; Craig Yoshioka; Christopher Irving; Anke Mulder; Pick-Wei Lau; Dmitry Lyumkis; Clinton S Potter; Bridget Carragher
Journal:  J Struct Biol       Date:  2009-04       Impact factor: 2.867

10.  Insights into the evolution of a complex virus from the crystal structure of vaccinia virus D13.

Authors:  Mohammad W Bahar; Stephen C Graham; David I Stuart; Jonathan M Grimes
Journal:  Structure       Date:  2011-07-13       Impact factor: 5.006

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  39 in total

1.  Functional interplay between a virus and the ESCRT machinery in archaea.

Authors:  Jamie C Snyder; Rachel Y Samson; Susan K Brumfield; Stephen D Bell; Mark J Young
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-10       Impact factor: 11.205

2.  The structure of the NTPase that powers DNA packaging into Sulfolobus turreted icosahedral virus 2.

Authors:  Lotta J Happonen; Esko Oksanen; Lassi Liljeroos; Adrian Goldman; Tommi Kajander; Sarah J Butcher
Journal:  J Virol       Date:  2013-05-22       Impact factor: 5.103

3.  Atomic structure of the human cytomegalovirus capsid with its securing tegument layer of pp150.

Authors:  Xuekui Yu; Jonathan Jih; Jiansen Jiang; Z Hong Zhou
Journal:  Science       Date:  2017-06-30       Impact factor: 47.728

4.  A Novel Type of Polyhedral Viruses Infecting Hyperthermophilic Archaea.

Authors:  Ying Liu; Sonoko Ishino; Yoshizumi Ishino; Gérard Pehau-Arnaudet; Mart Krupovic; David Prangishvili
Journal:  J Virol       Date:  2017-06-09       Impact factor: 5.103

5.  The Minor Capsid Protein VP11 of Thermophilic Bacteriophage P23-77 Facilitates Virus Assembly by Using Lipid-Protein Interactions.

Authors:  Alice Pawlowski; Anni M Moilanen; Ilona A Rissanen; Juha A E Määttä; Vesa P Hytönen; Janne A Ihalainen; Jaana K H Bamford
Journal:  J Virol       Date:  2015-05-13       Impact factor: 5.103

Review 6.  Viruses of archaea: Structural, functional, environmental and evolutionary genomics.

Authors:  Mart Krupovic; Virginija Cvirkaite-Krupovic; Jaime Iranzo; David Prangishvili; Eugene V Koonin
Journal:  Virus Res       Date:  2017-11-22       Impact factor: 3.303

Review 7.  The enigmatic archaeal virosphere.

Authors:  David Prangishvili; Dennis H Bamford; Patrick Forterre; Jaime Iranzo; Eugene V Koonin; Mart Krupovic
Journal:  Nat Rev Microbiol       Date:  2017-11-10       Impact factor: 60.633

8.  The cryo-EM structure of African swine fever virus unravels a unique architecture comprising two icosahedral protein capsids and two lipoprotein membranes.

Authors:  German Andrés; Diego Charro; Tania Matamoros; Rebecca S Dillard; Nicola G A Abrescia
Journal:  J Biol Chem       Date:  2019-10-24       Impact factor: 5.157

9.  A packing for A-form DNA in an icosahedral virus.

Authors:  Fengbin Wang; Ying Liu; Zhangli Su; Tomasz Osinski; Guilherme A P de Oliveira; James F Conway; Stefan Schouten; Mart Krupovic; David Prangishvili; Edward H Egelman
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-21       Impact factor: 11.205

10.  Structures of filamentous viruses infecting hyperthermophilic archaea explain DNA stabilization in extreme environments.

Authors:  Fengbin Wang; Diana P Baquero; Leticia C Beltran; Zhangli Su; Tomasz Osinski; Weili Zheng; David Prangishvili; Mart Krupovic; Edward H Egelman
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-05       Impact factor: 11.205

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