Literature DB >> 16834304

Nonplanar heme deformations and excited state displacements in nickel porphyrins detected by Raman spectroscopy at soret excitation.

Qing Huang1, Craig J Medforth, Reinhard Schweitzer-Stenner.   

Abstract

We have correlated the Raman intensities of out-of-plane modes of nickel porphyrins with the nonplanar deformations of specific symmetries, i.e., static normal coordinate deformations (SNCDs) expressed in terms of irreducible representations of the unperturbed D(4h) point group. The model porphyrins Ni(II) octaethyltetraphenylporphyrin (NiOETPP), Ni(II) tetra(isopropyl)porphyrin (NiT((i)Pr)P), Ni(II) tetra(tert-butyl)porphyrin (NiT((t)Bu)P), and Ni(II) meso-tetraphenylporphyrin (NiTPP) were chosen because they exhibit significant out-of-plane deformations of different symmetries. At B-band excitation, the Raman scattering of out-of-plane modes becomes activated mostly via the Franck-Condon mechanism. Some characteristic bands from out-of-plane modes in the spectra were identified as reliable predictors of the type and magnitude of out-of-plane deformation. The gamma(10)-gamma(13) bands are indicators of ruffling (B(1u)) deformations for porphyrins, as confirmed by data for NiTPP, NiT((i)Pr)P, and NiT((t)Bu)P, where the Raman intensity increases with the magnitude of the ruffling deformation. The gamma(15)-gamma(17) bands are indicators of saddling (B(2u)) deformations, as shown by data for NiOETPP, which is highly saddled. By comparing the relative intensities of these prominent Raman bands we estimated the vibronic coupling parameters using a self-consistent analysis, and showed that they reproduce the respective B-band absorption profiles. We also identified the deformations along the lowest wavenumber normal coordinates as the predominant reason for the Raman activity of out-of-plane modes. Our results suggest that some of the normal coordinates (gamma(10) and gamma(13)) may be used as tools to quantitatively probe the nonplanar deformations of metalloporphyrins with alkyl substituents at the meso-positions. Out-of-plane deformations also increase the vibronic coupling strength of some low frequency in-plane Raman modes, namely, nu(7) and nu(8). Generally, the Raman data suggest that the excited B-state is substantially more nonplanar than the ground state. The overall larger vibronic coupling of ruffled porphyrins yields substantially larger dipole strengths for the vibronic sidebands associated with the B-state transition, so that the relative absorptivity of the B(v) band can be used as a convenient tool to probe the nonplanarity of the porphyrin macrocycle.

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Year:  2005        PMID: 16834304     DOI: 10.1021/jp052986a

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  9 in total

1.  Evidence for a ferryl intermediate in a heme-based dioxygenase.

Authors:  Ariel Lewis-Ballester; Dipanwita Batabyal; Tsuyoshi Egawa; Changyuan Lu; Yu Lin; Marcelo A Marti; Luciana Capece; Dario A Estrin; Syun-Ru Yeh
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-29       Impact factor: 11.205

2.  Controlling conformational flexibility of an O₂-binding H-NOX domain.

Authors:  Emily E Weinert; Christine M Phillips-Piro; Rosalie Tran; Richard A Mathies; Michael A Marletta
Journal:  Biochemistry       Date:  2011-07-15       Impact factor: 3.162

3.  Reaction intermediates in the heme degradation reaction by HutZ from Vibrio cholerae.

Authors:  Takeshi Uchida; Yukari Sekine; Nobuhiko Dojun; Ariel Lewis-Ballester; Izumi Ishigami; Toshitaka Matsui; Syun-Ru Yeh; Koichiro Ishimori
Journal:  Dalton Trans       Date:  2017-06-27       Impact factor: 4.390

4.  Resonance Raman spectroscopy reveals that substrate structure selectively impacts the heme-bound diatomic ligands of CYP17.

Authors:  Piotr J Mak; Michael C Gregory; Stephen G Sligar; James R Kincaid
Journal:  Biochemistry       Date:  2013-12-20       Impact factor: 3.162

5.  Low-frequency mode activity of heme: femtosecond coherence spectroscopy of iron porphine halides and nitrophorin.

Authors:  Minoru Kubo; Flaviu Gruia; Abdelkrim Benabbas; Alexander Barabanschikov; William R Montfort; Estelle M Maes; Paul M Champion
Journal:  J Am Chem Soc       Date:  2008-07-03       Impact factor: 15.419

6.  Resonance Raman spectra of an O2-binding H-NOX domain reveal heme relaxation upon mutation.

Authors:  Rosalie Tran; Elizabeth M Boon; Michael A Marletta; Richard A Mathies
Journal:  Biochemistry       Date:  2009-09-15       Impact factor: 3.162

7.  Eukaryotic extracellular catalase-peroxidase from Magnaporthe grisea - Biophysical/chemical characterization of the first representative from a novel phytopathogenic KatG group.

Authors:  Marcel Zámocký; Enrica Droghetti; Marzia Bellei; Bernhard Gasselhuber; Martin Pabst; Paul G Furtmüller; Gianantonio Battistuzzi; Giulietta Smulevich; Christian Obinger
Journal:  Biochimie       Date:  2011-09-29       Impact factor: 4.372

8.  Structure-function characterization of the mono- and diheme forms of MhuD, a noncanonical heme oxygenase from Mycobacterium tuberculosis.

Authors:  Samuel N Snyder; Piotr J Mak
Journal:  J Biol Chem       Date:  2021-12-06       Impact factor: 5.157

9.  Spectroscopic evidence of the effect of hydrogen peroxide excess on the coproheme decarboxylase from actinobacterial Corynebacterium diphtheriae.

Authors:  Federico Sebastiani; Chiara Niccoli; Hanna Michlits; Riccardo Risorti; Maurizio Becucci; Stefan Hofbauer; Giulietta Smulevich
Journal:  J Raman Spectrosc       Date:  2022-03-08       Impact factor: 2.727

  9 in total

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