Literature DB >> 16829555

Conformational study of Met-enkephalin based on the ECEPP force fields.

Lixin Zhan1, Jeff Z Y Chen, Wing-Ki Liu.   

Abstract

We report a computational study of the small peptide Met-enkephalin based on the ECEPP/2 and ECEPP/3 force fields using the basin paving method. We have located a new global minimum when using the ECEPP/3 force field with peptide angles omega fixed at 180 degrees. With this new result, we can conclude that the lowest energy configurations of Met-enkephalin predicted based on all four versions of ECEPP have a classic gamma-turn centered at residue Gly3 and a beta-turn at residues Gly3-Phe4. However, minor differences between the structures also exist.

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Year:  2006        PMID: 16829555      PMCID: PMC1562380          DOI: 10.1529/biophysj.106.083899

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  26 in total

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Journal:  Proteins       Date:  1999-03-01

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Journal:  Biophys J       Date:  2002-04       Impact factor: 4.033

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Journal:  Phys Rev Lett       Date:  2002-01-28       Impact factor: 9.161

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Journal:  Phys Rev Lett       Date:  2003-05-08       Impact factor: 9.161

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Authors:  K Vengadesan; N Gautham
Journal:  Biopolymers       Date:  2004-08-15       Impact factor: 2.505

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  2 in total

1.  Role of single-point mutations and deletions on transition temperatures in ideal proteinogenic heteropolymer chains in the gas phase.

Authors:  L Olivares-Quiroz
Journal:  Eur Biophys J       Date:  2016-01-27       Impact factor: 1.733

2.  Transition pathway and its free-energy profile: a protocol for protein folding simulations.

Authors:  In-Ho Lee; Seung-Yeon Kim; Jooyoung Lee
Journal:  Int J Mol Sci       Date:  2013-08-02       Impact factor: 5.923

  2 in total

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