Literature DB >> 16821716

Identification of oxalotrophic bacteria by neural network analysis of numerical phenetic data.

N Sahin1, S Aydin.   

Abstract

A new approach with artificial neural network (ANN) was applied to numerical taxonomy of bacteria using the oxalate as carbon and energy source. For this aim the characters effective in differentiating separate groups were selected from morphological, physiological and biochemical test results. Fourteen aerobic, Gram-negative, oxalate-utilizing isolates and four oxalate-utilizing reference strains (Ralstonia eutropha DSM 428, Methylobacterium extorquens DSM 1337T, Ralstonia oxalatica DSM 1105T, Oxalicibacterium flavum DSM 15506T) were included in the study. ANN program used here was developed in Borland C++ language. Iterations were performed on an IBM compatible PC computer. ANN architecture having feed-forward backpropagation algorithm was used for teaching generalized delta rule. The results show that ANN can have a large potential in solving the taxonomic problems of oxalate-utilizing bacteria.

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Year:  2006        PMID: 16821716     DOI: 10.1007/BF02932161

Source DB:  PubMed          Journal:  Folia Microbiol (Praha)        ISSN: 0015-5632            Impact factor:   2.629


  15 in total

1.  Taxonomic position of "Pseudomonas oxalaticus" strain ox14T (DSM 1105T) (Khambata and Bhat, 1953) and its description in the genus Ralstonia as Ralstonia oxalatica comb. nov.

Authors:  N Sahin; K Işik; A U Tamer; M Goodfellow
Journal:  Syst Appl Microbiol       Date:  2000-06       Impact factor: 4.022

2.  The isolation and characteristics of an oxalate-decomposing organism.

Authors:  G C JAYASURIYA
Journal:  J Gen Microbiol       Date:  1955-06

3.  Studies on a new oxalate-decomposing bacterium, Pseudomonas oxalaticus.

Authors:  S R KHAMBATA; J V BHAT
Journal:  J Bacteriol       Date:  1953-11       Impact factor: 3.490

4.  Rapid identification of Streptococcus and Enterococcus species using diffuse reflectance-absorbance Fourier transform infrared spectroscopy and artificial neural networks.

Authors:  R Goodacre; E M Timmins; P J Rooney; J J Rowland; D B Kell
Journal:  FEMS Microbiol Lett       Date:  1996-07-01       Impact factor: 2.742

5.  Isolation and characterization of a new type of aerobic, oxalic acid utilizing bacteria, and proposal of Oxalicibacterium flavum gen. nov., sp. nov.

Authors:  Abdurrahman U Tamer; Michel Aragno; Nurettin Sahin
Journal:  Syst Appl Microbiol       Date:  2002-12       Impact factor: 4.022

6.  Artificial neural network based identification of environmental bacteria by gas-chromatographic and electrophoretic data.

Authors:  M Giacomini; C Ruggiero; L Calegari; S Bertone
Journal:  J Microbiol Methods       Date:  2000-12-01       Impact factor: 2.363

7.  Artificial neural network identification of heterotrophic marine bacteria based on their fatty-acid composition.

Authors:  M Giacomini; C Ruggiero; S Bertone; L Calegari
Journal:  IEEE Trans Biomed Eng       Date:  1997-12       Impact factor: 4.538

8.  Isolation and characterization of mesophilic, oxalate-degrading Streptomyces from plant rhizosphere and forest soils.

Authors:  Nurettin Sahin
Journal:  Naturwissenschaften       Date:  2004-10

9.  A comparison of Bacteroides ureolyticus isolates from different clinical sources.

Authors:  B I Duerden; A Eley; L Goodwin; J T Magee; J M Hindmarch; K W Bennett
Journal:  J Med Microbiol       Date:  1989-05       Impact factor: 2.472

10.  Escherichia coli O157:H7 restriction pattern recognition by artificial neural network.

Authors:  C A Carson; J M Keller; K K McAdoo; D Wang; B Higgins; C W Bailey; J G Thorne; B J Payne; M Skala; A W Hahn
Journal:  J Clin Microbiol       Date:  1995-11       Impact factor: 5.948

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  1 in total

1.  Oxalyl-coenzyme A reduction to glyoxylate is the preferred route of oxalate assimilation in Methylobacterium extorquens AM1.

Authors:  Kathrin Schneider; Elizabeth Skovran; Julia A Vorholt
Journal:  J Bacteriol       Date:  2012-04-06       Impact factor: 3.490

  1 in total

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