Literature DB >> 16818468

Many expressed genes in bacteria and yeast are transcribed only once per cell cycle.

Michaël Bon1, Simon J McGowan, Peter R Cook.   

Abstract

The steady-state levels of all mature transcripts expressed in bacteria and yeast have been cataloged, but we do not yet know the numbers of nascent transcripts and so RNA polymerases engaged on all genes. Such catalogs are presented here. As mRNA levels depend on the balance between synthesis and degradation, we use published data to calculate the numbers of engaged polymerases required to maintain these levels in the face of the known rate of degradation. Most genes, including essential ones, prove not to be transcribed most of the time, and many produce only one message per cell cycle. Some cells even fail to produce an essential message during a cycle, and so must depend on their mother's messages and/or proteins for survival. We speculate that evolution sets the rate of message production so low to conserve energy, minimize transcription-induced mutation, and permit regulation over the widest range.

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Year:  2006        PMID: 16818468     DOI: 10.1096/fj.06-6087fje

Source DB:  PubMed          Journal:  FASEB J        ISSN: 0892-6638            Impact factor:   5.191


  16 in total

1.  A conserved organization of transcription during embryonic stem cell differentiation and in cells with high C value.

Authors:  Inês Faro-Trindade; Peter R Cook
Journal:  Mol Biol Cell       Date:  2006-04-19       Impact factor: 4.138

Review 2.  Single-molecule biophysics: at the interface of biology, physics and chemistry.

Authors:  Ashok A Deniz; Samrat Mukhopadhyay; Edward A Lemke
Journal:  J R Soc Interface       Date:  2008-01-06       Impact factor: 4.118

3.  Stochasticity and traffic jams in the transcription of ribosomal RNA: Intriguing role of termination and antitermination.

Authors:  Stefan Klumpp; Terence Hwa
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-18       Impact factor: 11.205

Review 4.  Mechanisms and evolution of control logic in prokaryotic transcriptional regulation.

Authors:  Sacha A F T van Hijum; Marnix H Medema; Oscar P Kuipers
Journal:  Microbiol Mol Biol Rev       Date:  2009-09       Impact factor: 11.056

5.  Rho and NusG suppress pervasive antisense transcription in Escherichia coli.

Authors:  Jason M Peters; Rachel A Mooney; Jeffrey A Grass; Erik D Jessen; Frances Tran; Robert Landick
Journal:  Genes Dev       Date:  2012-12-01       Impact factor: 11.361

6.  Nucleosomes Are Essential for Proper Regulation of a Multigated Promoter in Saccharomyces cerevisiae.

Authors:  Robert M Yarrington; Jenna M Goodrum; David J Stillman
Journal:  Genetics       Date:  2015-12-01       Impact factor: 4.562

7.  Effects of transcriptional pausing on gene expression dynamics.

Authors:  Tiina Rajala; Antti Häkkinen; Shannon Healy; Olli Yli-Harja; Andre S Ribeiro
Journal:  PLoS Comput Biol       Date:  2010-03-12       Impact factor: 4.475

8.  A complete set of nascent transcription rates for yeast genes.

Authors:  Vicent Pelechano; Sebastián Chávez; José E Pérez-Ortín
Journal:  PLoS One       Date:  2010-11-16       Impact factor: 3.240

9.  Single-RNA counting reveals alternative modes of gene expression in yeast.

Authors:  Daniel Zenklusen; Daniel R Larson; Robert H Singer
Journal:  Nat Struct Mol Biol       Date:  2008-11-16       Impact factor: 15.369

Review 10.  Traffic patrol in the transcription of ribosomal RNA.

Authors:  Stefan Klumpp; Terence Hwa
Journal:  RNA Biol       Date:  2009-09-07       Impact factor: 4.652

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