Literature DB >> 19502817

Traffic patrol in the transcription of ribosomal RNA.

Stefan Klumpp1, Terence Hwa.   

Abstract

Synthesis of ribosomal RNA (rRNA) is essential for fast cell growth and rRNA transcription is typically characterized by dense traffic of RNA polymerases along the rRNA genes. However, dense traffic is susceptible to traffic jams which may arise inevitably due to stochastic pausing of the polymerases. Based on recent theoretical and experimental results, we suggest that the "traffic viewpoint" provides a unique perspective towards understanding the control of ribosome synthesis in both bacterial and eukaryotic cells.

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Year:  2009        PMID: 19502817      PMCID: PMC2859892          DOI: 10.4161/rna.6.4.8952

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  22 in total

Review 1.  The economics of ribosome biosynthesis in yeast.

Authors:  J R Warner
Journal:  Trends Biochem Sci       Date:  1999-11       Impact factor: 13.807

Review 2.  Control of rRNA expression in Escherichia coli.

Authors:  David A Schneider; Wilma Ross; Richard L Gourse
Journal:  Curr Opin Microbiol       Date:  2003-04       Impact factor: 7.934

3.  rRNA transcription rate in Escherichia coli.

Authors:  S L Gotta; O L Miller; S L French
Journal:  J Bacteriol       Date:  1991-10       Impact factor: 3.490

4.  Effect of growth rate on the amounts of ribosomal and transfer ribonucleic acids in yeast.

Authors:  C Waldron; F Lacroute
Journal:  J Bacteriol       Date:  1975-06       Impact factor: 3.490

5.  Effects of the antiterminator BoxA on transcription elongation kinetics and ppGpp inhibition of transcription elongation in Escherichia coli.

Authors:  U Vogel; K F Jensen
Journal:  J Biol Chem       Date:  1995-08-04       Impact factor: 5.157

6.  Activities of constitutive promoters in Escherichia coli.

Authors:  S Liang; M Bipatnath; Y Xu; S Chen; P Dennis; M Ehrenberg; H Bremer
Journal:  J Mol Biol       Date:  1999-09-10       Impact factor: 5.469

7.  Coordinate control of syntheses of ribosomal ribonucleic acid and ribosomal proteins during nutritional shift-up in Saccharomyces cerevisiae.

Authors:  D R Kief; J R Warner
Journal:  Mol Cell Biol       Date:  1981-11       Impact factor: 4.272

Review 8.  Control of rRNA transcription in Escherichia coli.

Authors:  C Condon; C Squires; C L Squires
Journal:  Microbiol Rev       Date:  1995-12

9.  Coupling of rRNA transcription and ribosomal assembly in vivo. Formation of active ribosomal subunits in Escherichia coli requires transcription of rRNA genes by host RNA polymerase which cannot be replaced by bacteriophage T7 RNA polymerase.

Authors:  B T Lewicki; T Margus; J Remme; K H Nierhaus
Journal:  J Mol Biol       Date:  1993-06-05       Impact factor: 5.469

10.  Depletion of functional ribosomal RNA operons in Escherichia coli causes increased expression of the remaining intact copies.

Authors:  C Condon; S French; C Squires; C L Squires
Journal:  EMBO J       Date:  1993-11       Impact factor: 11.598

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  5 in total

1.  Why eukaryotic cells use introns to enhance gene expression: splicing reduces transcription-associated mutagenesis by inhibiting topoisomerase I cutting activity.

Authors:  Deng-Ke Niu; Yu-Fei Yang
Journal:  Biol Direct       Date:  2011-05-18       Impact factor: 4.540

2.  A comparison of key aspects of gene regulation in Streptomyces coelicolor and Escherichia coli using nucleotide-resolution transcription maps produced in parallel by global and differential RNA sequencing.

Authors:  David A Romero; Ayad H Hasan; Yu-Fei Lin; Louise Kime; Olatz Ruiz-Larrabeiti; Mia Urem; Giselda Bucca; Lira Mamanova; Emma E Laing; Gilles P van Wezel; Colin P Smith; Vladimir R Kaberdin; Kenneth J McDowall
Journal:  Mol Microbiol       Date:  2014-09-30       Impact factor: 3.501

3.  Dynamics of translation can determine the spatial organization of membrane-bound proteins and their mRNA.

Authors:  Elgin Korkmazhan; Hamid Teimouri; Neil Peterman; Erel Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2017-12-04       Impact factor: 11.205

4.  A deterministic mathematical model for bidirectional excluded flow with Langmuir kinetics.

Authors:  Yoram Zarai; Michael Margaliot; Tamir Tuller
Journal:  PLoS One       Date:  2017-08-23       Impact factor: 3.240

5.  Control of transcription elongation by GreA determines rate of gene expression in Streptococcus pneumoniae.

Authors:  Yulia Yuzenkova; Pamela Gamba; Martijn Herber; Laetitia Attaiech; Sulman Shafeeq; Oscar P Kuipers; Stefan Klumpp; Nikolay Zenkin; Jan-Willem Veening
Journal:  Nucleic Acids Res       Date:  2014-09-04       Impact factor: 16.971

  5 in total

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