Literature DB >> 16809666

Copy number variation: new insights in genome diversity.

Jennifer L Freeman1, George H Perry, Lars Feuk, Richard Redon, Steven A McCarroll, David M Altshuler, Hiroyuki Aburatani, Keith W Jones, Chris Tyler-Smith, Matthew E Hurles, Nigel P Carter, Stephen W Scherer, Charles Lee.   

Abstract

DNA copy number variation has long been associated with specific chromosomal rearrangements and genomic disorders, but its ubiquity in mammalian genomes was not fully realized until recently. Although our understanding of the extent of this variation is still developing, it seems likely that, at least in humans, copy number variants (CNVs) account for a substantial amount of genetic variation. Since many CNVs include genes that result in differential levels of gene expression, CNVs may account for a significant proportion of normal phenotypic variation. Current efforts are directed toward a more comprehensive cataloging and characterization of CNVs that will provide the basis for determining how genomic diversity impacts biological function, evolution, and common human diseases.

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Year:  2006        PMID: 16809666     DOI: 10.1101/gr.3677206

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  293 in total

1.  Genome-wide SNP genotyping identifies the Stereocilin (STRC) gene as a major contributor to pediatric bilateral sensorineural hearing impairment.

Authors:  Lauren J Francey; Laura K Conlin; Hanna E Kadesch; Dinah Clark; Donna Berrodin; Yi Sun; Joe Glessner; Hakon Hakonarson; Chaim Jalas; Chaim Landau; Nancy B Spinner; Margaret Kenna; Michal Sagi; Heidi L Rehm; Ian D Krantz
Journal:  Am J Med Genet A       Date:  2011-12-06       Impact factor: 2.802

2.  Neuronal DNA content variation (DCV) with regional and individual differences in the human brain.

Authors:  Jurjen W Westra; Richard R Rivera; Diane M Bushman; Yun C Yung; Suzanne E Peterson; Serena Barral; Jerold Chun
Journal:  J Comp Neurol       Date:  2010-10-01       Impact factor: 3.215

3.  Genetic factors predisposing to systemic lupus erythematosus and lupus nephritis.

Authors:  Paula S Ramos; Elisabeth E Brown; Robert P Kimberly; Carl D Langefeld
Journal:  Semin Nephrol       Date:  2010-03       Impact factor: 5.299

Review 4.  Genomic copy number variation in disorders of cognitive development.

Authors:  Eric M Morrow
Journal:  J Am Acad Child Adolesc Psychiatry       Date:  2010-11       Impact factor: 8.829

Review 5.  Regions of homozygosity and their impact on complex diseases and traits.

Authors:  Chee Seng Ku; Nasheen Naidoo; Shu Mei Teo; Yudi Pawitan
Journal:  Hum Genet       Date:  2010-11-23       Impact factor: 4.132

Review 6.  Detecting structural variations in the human genome using next generation sequencing.

Authors:  Ruibin Xi; Tae-Min Kim; Peter J Park
Journal:  Brief Funct Genomics       Date:  2011-01-06       Impact factor: 4.241

7.  Identification of copy number variation hotspots in human populations.

Authors:  Wenqing Fu; Feng Zhang; Yi Wang; Xun Gu; Li Jin
Journal:  Am J Hum Genet       Date:  2010-10-08       Impact factor: 11.025

Review 8.  Defining molecular and cellular responses after low and high linear energy transfer radiations to develop biomarkers of carcinogenic risk or therapeutic outcome.

Authors:  Michael Story; Liang-hao Ding; William A Brock; K Kian Ang; Ghazi Alsbeih; John Minna; Seongmi Park; Amit Das
Journal:  Health Phys       Date:  2012-11       Impact factor: 1.316

9.  Replication stress induces genome-wide copy number changes in human cells that resemble polymorphic and pathogenic variants.

Authors:  Martin F Arlt; Jennifer G Mulle; Valerie M Schaibley; Ryan L Ragland; Sandra G Durkin; Stephen T Warren; Thomas W Glover
Journal:  Am J Hum Genet       Date:  2009-02-19       Impact factor: 11.025

10.  Common copy number variation detection from multiple sequenced samples.

Authors:  Junbo Duan; Hong-Wen Deng; Yu-Ping Wang
Journal:  IEEE Trans Biomed Eng       Date:  2014-03       Impact factor: 4.538

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