Literature DB >> 16808987

The quest for the universals of protein evolution.

Eduardo P C Rocha1.   

Abstract

The sequences of proteins change at dramatically different rates. Unraveling the association between this variability and cellular and ecological processes will enable a better understanding of protein function and evolution. Although weak associations of protein evolutionary rates with a plethora of variables have been reported, none withstands comparison with the effect of expression levels. A recent report by Drummond et al. suggests that the dominant role of expression levels in slowing the rate of protein evolution stems from selection for translation robustness.

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Year:  2006        PMID: 16808987     DOI: 10.1016/j.tig.2006.06.004

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  37 in total

1.  Investment in rapid growth shapes the evolutionary rates of essential proteins.

Authors:  Sara Vieira-Silva; Marie Touchon; Sophie S Abby; Eduardo P C Rocha
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-30       Impact factor: 11.205

2.  Unique genes in giant viruses: regular substitution pattern and anomalously short size.

Authors:  Hiroyuki Ogata; Jean-Michel Claverie
Journal:  Genome Res       Date:  2007-07-25       Impact factor: 9.043

Review 3.  Rapid bursts and slow declines: on the possible evolutionary trajectories of enzymes.

Authors:  Matilda S Newton; Vickery L Arcus; Wayne M Patrick
Journal:  J R Soc Interface       Date:  2015-06-06       Impact factor: 4.118

4.  Secreted Proteins Defy the Expression Level-Evolutionary Rate Anticorrelation.

Authors:  Felix Feyertag; Patricia M Berninsone; David Alvarez-Ponce
Journal:  Mol Biol Evol       Date:  2017-03-01       Impact factor: 16.240

5.  Protein abundance is key to distinguish promiscuous from functional phosphorylation based on evolutionary information.

Authors:  Emmanuel D Levy; Stephen W Michnick; Christian R Landry
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-09-19       Impact factor: 6.237

Review 6.  Three independent determinants of protein evolutionary rate.

Authors:  Sun Shim Choi; Sridhar Hannenhalli
Journal:  J Mol Evol       Date:  2013-02-12       Impact factor: 2.395

7.  Genomic analysis reveals major determinants of cis-regulatory variation in Capsella grandiflora.

Authors:  Kim A Steige; Benjamin Laenen; Johan Reimegård; Douglas G Scofield; Tanja Slotte
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-17       Impact factor: 11.205

8.  The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution.

Authors:  Jean-François Gout; Daniel Kahn; Laurent Duret
Journal:  PLoS Genet       Date:  2010-05-13       Impact factor: 5.917

9.  Integrated assessment of genomic correlates of protein evolutionary rate.

Authors:  Yu Xia; Eric A Franzosa; Mark B Gerstein
Journal:  PLoS Comput Biol       Date:  2009-06-12       Impact factor: 4.475

10.  Evolutionary rate patterns of the Gibberellin pathway genes.

Authors:  Yan-hua Yang; Fu-min Zhang; Song Ge
Journal:  BMC Evol Biol       Date:  2009-08-18       Impact factor: 3.260

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