Literature DB >> 16839008

A TDDFT study of the optical response of DNA bases, base pairs, and their tautomers in the gas phase.

Argyrios Tsolakidis1, Efthimios Kaxiras.   

Abstract

We present calculations of the optical response of the DNA bases and base pairs both in their normal and tautomeric forms in the gas phase, using time-dependent density functional theory (TDDFT). These calculations are performed in real time within the adiabatic approximation with a basis of local orbitals. Our results for the individual bases are in good agreement with experiment and computationally more demanding calculations of chemical accuracy. The optical response of base pairs indicates that the differences between normal and tautomeric forms in certain cases are significant enough to provide a means of identification.

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Year:  2005        PMID: 16839008     DOI: 10.1021/jp044729w

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  9 in total

1.  Primary processes underlying the photostability of isolated DNA bases: adenine.

Authors:  Helmut Satzger; Dave Townsend; Marek Z Zgierski; Serguei Patchkovskii; Susanne Ullrich; Albert Stolow
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-27       Impact factor: 11.205

2.  Theoretical models of eumelanin protomolecules and their optical properties.

Authors:  Sheng Meng; Efthimios Kaxiras
Journal:  Biophys J       Date:  2007-11-09       Impact factor: 4.033

3.  Mechanisms for ultrafast nonradiative relaxation in electronically excited eumelanin constituents.

Authors:  Sheng Meng; Efthimios Kaxiras
Journal:  Biophys J       Date:  2008-08-01       Impact factor: 4.033

4.  Photoexcitation of dinucleoside radical cations: a time-dependent density functional study.

Authors:  Anil Kumar; Michael D Sevilla
Journal:  J Phys Chem B       Date:  2006-11-30       Impact factor: 2.991

5.  Comparison of gas phase intrinsic properties of cytosine and thymine nucleobases with their O-alkyl adducts: different hydrogen bonding preferences for thymine versus O-alkyl thymine.

Authors:  Zahra Aliakbar Tehrani; Alireza Fattahi
Journal:  J Mol Model       Date:  2013-04-07       Impact factor: 1.810

6.  UVA-visible photo-excitation of guanine radical cations produces sugar radicals in DNA and model structures.

Authors:  Amitava Adhikary; Aramice Y S Malkhasian; Sean Collins; Jessica Koppen; David Becker; Michael D Sevilla
Journal:  Nucleic Acids Res       Date:  2005-10-04       Impact factor: 16.971

7.  C5'- and C3'-sugar radicals produced via photo-excitation of one-electron oxidized adenine in 2'-deoxyadenosine and its derivatives.

Authors:  Amitava Adhikary; David Becker; Sean Collins; Jessica Koppen; Michael D Sevilla
Journal:  Nucleic Acids Res       Date:  2006-03-14       Impact factor: 16.971

8.  New Properties of a Bioinspired Pyridine Benzimidazole Compound as a Novel Differential Staining Agent for Endoplasmic Reticulum and Golgi Apparatus in Fluorescence Live Cell Imaging.

Authors:  Felipe M Llancalahuen; Juan A Fuentes; Alexander Carreño; César Zúñiga; Dayán Páez-Hernández; Manuel Gacitúa; Rubén Polanco; Marcelo D Preite; Ramiro Arratia-Pérez; Carolina Otero
Journal:  Front Chem       Date:  2018-08-15       Impact factor: 5.221

9.  A potential sensing mechanism for DNA nucleobases by optical properties of GO and MoS2 Nanopores.

Authors:  Vahid Faramarzi; Vahid Ahmadi; Bashir Fotouhi; Mostafa Abasifard
Journal:  Sci Rep       Date:  2019-04-17       Impact factor: 4.379

  9 in total

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