Literature DB >> 16799749

DNA counterion current and saturation examined by a MEMS-based solid state nanopore sensor.

Hung Chang1, Bala Murali Venkatesan, Samir M Iqbal, G Andreadakis, F Kosari, G Vasmatzis, Dimitrios Peroulis, Rashid Bashir.   

Abstract

Reports of DNA translocation measurements have been increasing rapidly in recent years due to advancements in pore fabrication and these measurements continue to provide insight into the physics of DNA translocations through MEMS based solid state nanopores. Specifically, it has recently been demonstrated that in addition to typically observed current blockages, enhancements in current can also be measured under certain conditions. Here, we further demonstrate the power of these nanopores for examining single DNA molecules by measuring these ionic currents as a function of the applied electric field and show that the direction of the resulting current pulse can provide fundamental insight into the physics of condensed counterions and the dipole saturation in single DNA molecules. Expanding on earlier work by Manning and others, we propose a model of DNA counterion ionic current and saturation of this current based on our experimental results. The work can have broad impact in understanding DNA sensing, DNA delivery into cells, DNA conductivity, and molecular electronics.

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Year:  2006        PMID: 16799749     DOI: 10.1007/s10544-006-9144-x

Source DB:  PubMed          Journal:  Biomed Microdevices        ISSN: 1387-2176            Impact factor:   2.838


  12 in total

1.  GPU-based real-time detection and analysis of biological targets using solid-state nanopores.

Authors:  Abdul Hafeez; Waseem Asghar; M Mustafa Rafique; Samir M Iqbal; Ali R Butt
Journal:  Med Biol Eng Comput       Date:  2012-03-25       Impact factor: 2.602

Review 2.  Enabling individualized therapy through nanotechnology.

Authors:  Jason H Sakamoto; Anne L van de Ven; Biana Godin; Elvin Blanco; Rita E Serda; Alessandro Grattoni; Arturas Ziemys; Ali Bouamrani; Tony Hu; Shivakumar I Ranganathan; Enrica De Rosa; Jonathan O Martinez; Christine A Smid; Rachel M Buchanan; Sei-Young Lee; Srimeenakshi Srinivasan; Matthew Landry; Anne Meyn; Ennio Tasciotti; Xuewu Liu; Paolo Decuzzi; Mauro Ferrari
Journal:  Pharmacol Res       Date:  2010-01-05       Impact factor: 7.658

3.  Lipid bilayer coated Al(2)O(3) nanopore sensors: towards a hybrid biological solid-state nanopore.

Authors:  Bala Murali Venkatesan; James Polans; Jeffrey Comer; Supriya Sridhar; David Wendell; Aleksei Aksimentiev; Rashid Bashir
Journal:  Biomed Microdevices       Date:  2011-08       Impact factor: 2.838

Review 4.  Flow of DNA in micro/nanofluidics: From fundamentals to applications.

Authors:  Lea Rems; Durgesh Kawale; L James Lee; Pouyan E Boukany
Journal:  Biomicrofluidics       Date:  2016-07-20       Impact factor: 2.800

Review 5.  Molecular diagnostics for personal medicine using a nanopore.

Authors:  Utkur M Mirsaidov; Deqiang Wang; Winston Timp; Gregory Timp
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2010 Jul-Aug

6.  Channel of viral DNA packaging motor for real time kinetic analysis of peptide oxidation states.

Authors:  Shaoying Wang; Zhi Zhou; Zhengyi Zhao; Hui Zhang; Farzin Haque; Peixuan Guo
Journal:  Biomaterials       Date:  2017-01-30       Impact factor: 12.479

7.  Real-time observations of single bacteriophage lambda DNA ejections in vitro.

Authors:  Paul Grayson; Lin Han; Tabita Winther; Rob Phillips
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-05       Impact factor: 11.205

8.  Incorporation of a viral DNA-packaging motor channel in lipid bilayers for real-time, single-molecule sensing of chemicals and double-stranded DNA.

Authors:  Farzin Haque; Jia Geng; Carlo Montemagno; Peixuan Guo
Journal:  Nat Protoc       Date:  2013-01-24       Impact factor: 13.491

9.  Reverse DNA translocation through a solid-state nanopore by magnetic tweezers.

Authors:  Hongbo Peng; Xinsheng Sean Ling
Journal:  Nanotechnology       Date:  2009-04-14       Impact factor: 3.874

10.  Shrinking of Solid-state Nanopores by Direct Thermal Heating.

Authors:  Waseem Asghar; Azhar Ilyas; Joseph Anthony Billo; Samir Muzaffar Iqbal
Journal:  Nanoscale Res Lett       Date:  2011-05-04       Impact factor: 4.703

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