Literature DB >> 16796557

Structural biology and drug discovery.

Giovanna Scapin1.   

Abstract

In the past few years macromolecular crystallography has become a standard technique used by many pharmaceutical and biotechnology companies. This methodology offers details of protein-ligand interactions at levels of resolution virtually unmatched by any other technique, and this approach holds the promise of novel, more effective, safer and cheaper drugs. Although crystallography remains a laborious and rather expensive technique, remarkable advances in structure determination and structure based drug design (SBDD) have been made in recent years. This process has been aided by recent technological innovations such as high-throughput crystallization, high performance synchrotron beamlines, and new methods in structural bioinformatics and computational chemistry prompted by the structural genomics effort. As a consequence of the increased availability of structural data, the use of structure-based information has expanded from simple protein-ligand interaction analysis to include other aspects of the drug discovery process like target selection and initial lead discovery that used to be almost the exclusive property of biology and chemistry. This review will cover recent examples to illustrate how macromolecular crystallography has evolved and how structural information is now being used in the different stages of the drug discovery process. Advantages and shortcomings of the methodology will also be discussed.

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Year:  2006        PMID: 16796557     DOI: 10.2174/138161206777585201

Source DB:  PubMed          Journal:  Curr Pharm Des        ISSN: 1381-6128            Impact factor:   3.116


  22 in total

1.  Mass spectrometry-based carboxyl footprinting of proteins: method evaluation.

Authors:  Hao Zhang; Jianzhong Wen; Richard Y-C Huang; Robert E Blankenship; Michael L Gross
Journal:  Int J Mass Spectrom       Date:  2012-02-15       Impact factor: 1.986

2.  Lessons from high-throughput protein crystallization screening: 10 years of practical experience.

Authors:  Joseph R Luft; Edward H Snell; George T Detitta
Journal:  Expert Opin Drug Discov       Date:  2011-03-22       Impact factor: 6.098

Review 3.  Structural genomics: keeping up with expanding knowledge of the protein universe.

Authors:  Marek Grabowski; Andrzej Joachimiak; Zbyszek Otwinowski; Wladek Minor
Journal:  Curr Opin Struct Biol       Date:  2007-06-22       Impact factor: 6.809

4.  Type IV traffic ATPase TrwD as molecular target to inhibit bacterial conjugation.

Authors:  Jorge Ripoll-Rozada; Yolanda García-Cazorla; María Getino; Cristina Machón; David Sanabria-Ríos; Fernando de la Cruz; Elena Cabezón; Ignacio Arechaga
Journal:  Mol Microbiol       Date:  2016-03-22       Impact factor: 3.501

5.  Remedial strategies in structural proteomics: expression, purification, and crystallization of the Vav1/Rac1 complex.

Authors:  Alexei Brooun; Scott A Foster; Jill E Chrencik; Ellen Y T Chien; Anand R Kolatkar; Markus Streiff; Paul Ramage; Hans Widmer; Gisbert Weckbecker; Peter Kuhn
Journal:  Protein Expr Purif       Date:  2006-12-05       Impact factor: 1.650

Review 6.  Strategies for targeting the cardiac sarcomere: avenues for novel drug discovery.

Authors:  Joshua B Holmes; Chang Yoon Doh; Ranganath Mamidi; Jiayang Li; Julian E Stelzer
Journal:  Expert Opin Drug Discov       Date:  2020-02-18       Impact factor: 6.098

Review 7.  Mesoscale imaging with cryo-light and X-rays: Larger than molecular machines, smaller than a cell.

Authors:  Axel A Ekman; Jian-Hua Chen; Jessica Guo; Gerry McDermott; Mark A Le Gros; Carolyn A Larabell
Journal:  Biol Cell       Date:  2016-11-14       Impact factor: 4.458

8.  A poke in the eye: inhibiting HIV-1 protease through its flap-recognition pocket.

Authors:  Kelly L Damm; Peter M U Ung; Jerome J Quintero; Jason E Gestwicki; Heather A Carlson
Journal:  Biopolymers       Date:  2008-08       Impact factor: 2.505

9.  Conformation and dynamics of biopharmaceuticals: transition of mass spectrometry-based tools from academe to industry.

Authors:  Igor A Kaltashov; Cedric E Bobst; Rinat R Abzalimov; Steven A Berkowitz; Damian Houde
Journal:  J Am Soc Mass Spectrom       Date:  2009-10-29       Impact factor: 3.109

10.  Structure-Based Design of Anticancer Prodrug PABA/NO.

Authors:  Xinhua Ji; Ajai Pal; Ravi Kalathur; Xun Hu; Yijun Gu; Joseph E Saavedra; Gregory S Buzard; Aloka Srinivasan; Larry K Keefer; Shivendra V Singh
Journal:  Drug Des Devel Ther       Date:  2008       Impact factor: 4.162

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