Literature DB >> 16790924

Solution of protein crystallographic structures by high-pressure cryocooling and noble-gas phasing.

Chae Un Kim1, Quan Hao, Sol M Gruner.   

Abstract

Room-pressure flash-cryocooling of protein crystals is the standard way to reduce radiation damage during data collection. Typically, it is necessary to find cryoprotection conditions by trial and error, a process that is not always successful. Recently, a new method, high-pressure cryocooling, was developed that does not require penetrative cryoprotectants and typically yields very high quality diffraction. Since this method involves helium gas as a pressurizing medium, it was of great interest to see whether the method could be extended to diffraction phasing by the incorporation of heavy noble gases such as krypton. A modified Kr-He high-pressure cyrocooling procedure is described wherein crystals are first pressurized with krypton gas to 10 MPa for 1 h. The krypton pressure is then released and the crystals are repressurized with helium over 150 MPa and cooled to liquid-nitrogen temperatures. Porcine pancreas elastase (PPE; 240 residues, 26 kDa) was selected as a test case for this study. Excellent diffraction was achieved by high-pressure cryocooling without penetrating cryoprotectants. A single 0.31 occupied krypton site in a PPE molecule [Bijvoet amplitude ratio (|DeltaF|/F) of 0.53%] was successfully used for SAD phasing at 1.3 A. This method has the potential to greatly simplify obtaining protein structures.

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Year:  2006        PMID: 16790924     DOI: 10.1107/S0907444906014727

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  12 in total

1.  Fast high-pressure freezing of protein crystals in their mother liquor.

Authors:  Anja Burkhardt; Martin Warmer; Saravanan Panneerselvam; Armin Wagner; Athina Zouni; Carina Glöckner; Rudolph Reimer; Heinrich Hohenberg; Alke Meents
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-03-31

2.  Hyperquenching for protein cryocrystallography.

Authors:  Matthew Warkentin; Viatcheslav Berejnov; Naji S Husseini; Robert E Thorne
Journal:  J Appl Crystallogr       Date:  2006-12-01       Impact factor: 3.304

3.  Evidence for liquid water during the high-density to low-density amorphous ice transition.

Authors:  Chae Un Kim; Buz Barstow; Mark W Tate; Sol M Gruner
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-03       Impact factor: 11.205

4.  A high-pressure cryocooling method for protein crystals and biological samples with reduced background X-ray scatter.

Authors:  Chae Un Kim; Jennifer L Wierman; Richard Gillilan; Enju Lima; Sol M Gruner
Journal:  J Appl Crystallogr       Date:  2012-12-21       Impact factor: 3.304

5.  Reduction of lattice disorder in protein crystals by high-pressure cryocooling.

Authors:  Qingqiu Huang; Sol M Gruner; Chae Un Kim; Yuxin Mao; Xiaochun Wu; Doletha M E Szebenyi
Journal:  J Appl Crystallogr       Date:  2016-02-01       Impact factor: 3.304

6.  Mechanistic Basis of Glutaminase Activation: A KEY ENZYME THAT PROMOTES GLUTAMINE METABOLISM IN CANCER CELLS.

Authors:  Yunxing Li; Jon W Erickson; Clint A Stalnecker; William P Katt; Qingqiu Huang; Richard A Cerione; Sekar Ramachandran
Journal:  J Biol Chem       Date:  2016-08-19       Impact factor: 5.157

7.  Tracking solvent and protein movement during CO2 release in carbonic anhydrase II crystals.

Authors:  Chae Un Kim; HyoJin Song; Balendu Sankara Avvaru; Sol M Gruner; SangYoun Park; Robert McKenna
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-25       Impact factor: 11.205

8.  Microcrystallography, high-pressure cryocooling and BioSAXS at MacCHESS.

Authors:  Ulrich Englich; Irina A Kriksunov; Richard A Cerione; Michael J Cook; Richard Gillilan; Sol M Gruner; Qingqui Huang; Chae Un Kim; William Miller; Soren Nielsen; David Schuller; Scott Smith; Doletha M E Szebenyi
Journal:  J Synchrotron Radiat       Date:  2010-11-05       Impact factor: 2.616

9.  High-resolution X-ray crystal structure of bovine H-protein using the high-pressure cryocooling method.

Authors:  Akifumi Higashiura; Kazunori Ohta; Mika Masaki; Masaru Sato; Koji Inaka; Hiroaki Tanaka; Atsushi Nakagawa
Journal:  J Synchrotron Radiat       Date:  2013-10-05       Impact factor: 2.616

10.  A standardized technique for high-pressure cooling of protein crystals.

Authors:  David Quirnheim Pais; Barbara Rathmann; Juergen Koepke; Cveta Tomova; Paul Wurzinger; Yvonne Thielmann
Journal:  Acta Crystallogr D Struct Biol       Date:  2017-11-22       Impact factor: 7.652

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