Literature DB >> 16787737

Local multidimensional scaling.

Jarkko Venna1, Samuel Kaski.   

Abstract

In a visualization task, every nonlinear projection method needs to make a compromise between trustworthiness and continuity. In a trustworthy projection the visualized proximities hold in the original data as well, whereas a continuous projection visualizes all proximities of the original data. We show experimentally that one of the multidimensional scaling methods, curvilinear components analysis, is good at maximizing trustworthiness. We then extend it to focus on local proximities both in the input and output space, and to explicitly make a user-tunable parameterized compromise between trustworthiness and continuity. The new method compares favorably to alternative nonlinear projection methods.

Mesh:

Year:  2006        PMID: 16787737     DOI: 10.1016/j.neunet.2006.05.014

Source DB:  PubMed          Journal:  Neural Netw        ISSN: 0893-6080


  14 in total

1.  Investigating the efficacy of nonlinear dimensionality reduction schemes in classifying gene and protein expression studies.

Authors:  George Lee; Carlos Rodriguez; Anant Madabhushi
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2008 Jul-Sep       Impact factor: 3.710

2.  A comprehensive segmentation, registration, and cancer detection scheme on 3 Tesla in vivo prostate DCE-MRI.

Authors:  Satish Viswanath; B Nicolas Bloch; Elisabeth Genega; Neil Rofsky; Robert Lenkinski; Jonathan Chappelow; Robert Toth; Anant Madabhushi
Journal:  Med Image Comput Comput Assist Interv       Date:  2008

3.  Force feature spaces for visualization and classification.

Authors:  Dragana Veljkovic; Kay A Robbins
Journal:  Int Conf Digit Signal Process Proc       Date:  2008-12-11

4.  Histology image analysis for carcinoma detection and grading.

Authors:  Lei He; L Rodney Long; Sameer Antani; George R Thoma
Journal:  Comput Methods Programs Biomed       Date:  2012-03-20       Impact factor: 5.428

5.  Detection of microsleep states from the EEG: a comparison of feature reduction methods.

Authors:  Sudhanshu S D P Ayyagari; Richard D Jones; Stephen J Weddell
Journal:  Med Biol Eng Comput       Date:  2021-07-17       Impact factor: 2.602

6.  Enhanced Multi-Protocol Analysis via Intelligent Supervised Embedding (EMPrAvISE): Detecting Prostate Cancer on Multi-Parametric MRI.

Authors:  Satish Viswanath; B Nicolas Bloch; Jonathan Chappelow; Pratik Patel; Neil Rofsky; Robert Lenkinski; Elisabeth Genega; Anant Madabhushi
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2011-03-04

7.  Consensus embedding: theory, algorithms and application to segmentation and classification of biomedical data.

Authors:  Satish Viswanath; Anant Madabhushi
Journal:  BMC Bioinformatics       Date:  2012-02-08       Impact factor: 3.169

8.  An intuitive graphical visualization technique for the interrogation of transcriptome data.

Authors:  Natascha Bushati; James Smith; James Briscoe; Christopher Watkins
Journal:  Nucleic Acids Res       Date:  2011-06-19       Impact factor: 16.971

9.  How Fitch-Margoliash Algorithm can Benefit from Multi Dimensional Scaling.

Authors:  Sylvain Lespinats; Delphine Grando; Eric Maréchal; Mohamed-Ali Hakimi; Olivier Tenaillon; Olivier Bastien
Journal:  Evol Bioinform Online       Date:  2011-06-07       Impact factor: 1.625

10.  Minimum curvilinearity to enhance topological prediction of protein interactions by network embedding.

Authors:  Carlo Vittorio Cannistraci; Gregorio Alanis-Lobato; Timothy Ravasi
Journal:  Bioinformatics       Date:  2013-07-01       Impact factor: 6.937

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