Literature DB >> 16780980

Piezophilic adaptation: a genomic point of view.

Francesca Simonato1, Stefano Campanaro, Federico M Lauro, Alessandro Vezzi, Michela D'Angelo, Nicola Vitulo, Giorgio Valle, Douglas H Bartlett.   

Abstract

Two-thirds of Earth's surface is covered by oceans, yet the study of this massive integrated living system is still in its infancy. Various environmental variables, such as high salinity, low and changeable nutrient availability and depth-correlated gradients of light, temperature, nutrients and pressure shape the diversity, physiology and ecology of marine species. As oceans present an average depth of 3800 m, deep-sea ecosystems represent the most common marine ecological niche. One of the key environment variables that influences the life and evolution of deep-sea organisms is high pressure. This extreme widespread condition requires specific adaptations, the nature of which remains largely unknown. Recent advances in genomic approaches, such as in sequencing technologies and global expression profiling, are rapidly increasing the data available to understand microbial evolution, biochemistry, physiology and diversity. This review summarises the analysis of the results published so far about microbial high pressure adaptation from a genomic point of view. Understanding high pressure adaptation mechanisms is not just a scientific exercise but has important biotechnological implications. For example, hydrostatic pressure is a reality for food science and technology, both for food preparation and preservation. An understanding of the effects of pressure on biomolecules will expand its use in the medical, industrial and biotechnological fields.

Entities:  

Mesh:

Year:  2006        PMID: 16780980     DOI: 10.1016/j.jbiotec.2006.03.038

Source DB:  PubMed          Journal:  J Biotechnol        ISSN: 0168-1656            Impact factor:   3.307


  48 in total

Review 1.  Diversity in transcripts and translational pattern of stress proteins in marine extremophiles.

Authors:  I V Ambily Nath; P A Loka Bharathi
Journal:  Extremophiles       Date:  2011-01-06       Impact factor: 2.395

2.  The unique 16S rRNA genes of piezophiles reflect both phylogeny and adaptation.

Authors:  Federico M Lauro; Roger A Chastain; Lesley E Blankenship; A Aristides Yayanos; Douglas H Bartlett
Journal:  Appl Environ Microbiol       Date:  2006-12-08       Impact factor: 4.792

Review 3.  Prokaryotic lifestyles in deep sea habitats.

Authors:  Federico M Lauro; Douglas H Bartlett
Journal:  Extremophiles       Date:  2007-01-17       Impact factor: 2.395

4.  Antimicrobial potential and taxonomic investigation of piezotolerant Streptomyces sp. NIOT-Ch-40 isolated from deep-sea sediment.

Authors:  Vishnu Priya Padmanaban; Pankaj Verma; Srividhyalakshmi Venkatabaskaran; Thirupathi Keppayan; Dharani Gopal; Ashok Kumar Sekar; Kirubagaran Ramalingam
Journal:  World J Microbiol Biotechnol       Date:  2017-01-02       Impact factor: 3.312

5.  Species richness and adaptation of marine fungi from deep-subseafloor sediments.

Authors:  Vanessa Rédou; Marion Navarri; Laurence Meslet-Cladière; Georges Barbier; Gaëtan Burgaud
Journal:  Appl Environ Microbiol       Date:  2015-03-13       Impact factor: 4.792

6.  Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype.

Authors:  J Cameron Thrash; Ben Temperton; Brandon K Swan; Zachary C Landry; Tanja Woyke; Edward F DeLong; Ramunas Stepanauskas; Stephan J Giovannoni
Journal:  ISME J       Date:  2014-01-23       Impact factor: 10.302

7.  Exposure of Bacillus subtilis to low pressure (5 kilopascals) induces several global regulons, including those involved in the SigB-mediated general stress response.

Authors:  Samantha M Waters; José A Robles-Martínez; Wayne L Nicholson
Journal:  Appl Environ Microbiol       Date:  2014-05-30       Impact factor: 4.792

8.  High-pressure tolerance in Halobacterium salinarum NRC-1 and other non-piezophilic prokaryotes.

Authors:  Adrienne Kish; Patrick L Griffin; Karyn L Rogers; Marilyn L Fogel; Russell J Hemley; Andrew Steele
Journal:  Extremophiles       Date:  2012-01-03       Impact factor: 2.395

9.  The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation.

Authors:  Qi-Long Qin; Xi-Ying Zhang; Xu-Min Wang; Gui-Ming Liu; Xiu-Lan Chen; Bin-Bin Xie; Hong-Yue Dang; Bai-Cheng Zhou; Jun Yu; Yu-Zhong Zhang
Journal:  BMC Genomics       Date:  2010-04-17       Impact factor: 3.969

10.  Molecular evolution of the hyperthermophilic archaea of the Pyrococcus genus: analysis of adaptation to different environmental conditions.

Authors:  Konstantin V Gunbin; Dmitry A Afonnikov; Nikolay A Kolchanov
Journal:  BMC Genomics       Date:  2009-12-30       Impact factor: 3.969

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.