Literature DB >> 17225926

Prokaryotic lifestyles in deep sea habitats.

Federico M Lauro1, Douglas H Bartlett.   

Abstract

Gradients of physicochemical factors influence the growth and survival of life in deep-sea environments. Insights into the characteristics of deep marine prokaryotes has greatly benefited from recent progress in whole genome and metagenome sequence analyses. Here we review the current state-of-the-art of deep-sea microbial genomics. Ongoing and future genome-enabled studies will allow for a better understanding of deep-sea evolution, physiology, biochemistry, community structure and nutrient cycling.

Entities:  

Mesh:

Year:  2007        PMID: 17225926     DOI: 10.1007/s00792-006-0059-5

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  105 in total

1.  Serial analysis of V6 ribosomal sequence tags (SARST-V6): a method for efficient, high-throughput analysis of microbial community composition.

Authors:  David T Kysela; Carmen Palacios; Mitchell L Sogin
Journal:  Environ Microbiol       Date:  2005-03       Impact factor: 5.491

2.  Archaea in coastal marine environments.

Authors:  E F DeLong
Journal:  Proc Natl Acad Sci U S A       Date:  1992-06-15       Impact factor: 11.205

3.  Microarray-based analysis of microbial community RNAs by whole-community RNA amplification.

Authors:  Haichun Gao; Zamin K Yang; Terry J Gentry; Liyou Wu; Christopher W Schadt; Jizhong Zhou
Journal:  Appl Environ Microbiol       Date:  2006-11-10       Impact factor: 4.792

4.  Comparative genomics of DNA fragments from six Antarctic marine planktonic bacteria.

Authors:  Joseph J Grzymski; Brandon J Carter; Edward F DeLong; Robert A Feldman; Amir Ghadiri; Alison E Murray
Journal:  Appl Environ Microbiol       Date:  2006-02       Impact factor: 4.792

5.  High pressure equilibrium studies on the dissociation-association of E. coli ribosomes.

Authors:  E Schulz; H D Lüdemann; R Jaenicke
Journal:  FEBS Lett       Date:  1976-04-15       Impact factor: 4.124

Review 6.  Pressure stability of proteins.

Authors:  J L Silva; G Weber
Journal:  Annu Rev Phys Chem       Date:  1993       Impact factor: 12.703

7.  Pressure-induced dissociation of ribosomes and elongation cycle intermediates. Stabilizing conditions and identification of the most sensitive functional state.

Authors:  M Gross; K Lehle; R Jaenicke; K H Nierhaus
Journal:  Eur J Biochem       Date:  1993-12-01

8.  Psychromonas profunda sp. nov., a psychropiezophilic bacterium from deep Atlantic sediments.

Authors:  Ying Xu; Yuichi Nogi; Chiaki Kato; Ziyuan Liang; Hans-Jürgen Rüger; Daniel De Kegel; Nicolas Glansdorff
Journal:  Int J Syst Evol Microbiol       Date:  2003-03       Impact factor: 2.747

9.  Stress response of Escherichia coli to elevated hydrostatic pressure.

Authors:  T J Welch; A Farewell; F C Neidhardt; D H Bartlett
Journal:  J Bacteriol       Date:  1993-11       Impact factor: 3.490

10.  Photobacterium profundum sp. nov., a new, moderately barophilic bacterial species isolated from a deep-sea sediment.

Authors:  Y Nogi; N Masui; C Kato
Journal:  Extremophiles       Date:  1998-01       Impact factor: 2.395

View more
  46 in total

1.  Isolation and characterization of a psychropiezophilic alphaproteobacterium.

Authors:  Emiley A Eloe; Francesca Malfatti; Jennifer Gutierrez; Kevin Hardy; Wilford E Schmidt; Kit Pogliano; Joe Pogliano; Farooq Azam; Douglas H Bartlett
Journal:  Appl Environ Microbiol       Date:  2011-09-23       Impact factor: 4.792

2.  Single cells within the Puerto Rico trench suggest hadal adaptation of microbial lineages.

Authors:  Rosa León-Zayas; Mark Novotny; Sheila Podell; Charles M Shepard; Eric Berkenpas; Sergey Nikolenko; Pavel Pevzner; Roger S Lasken; Douglas H Bartlett
Journal:  Appl Environ Microbiol       Date:  2015-09-18       Impact factor: 4.792

Review 3.  Microbial Surface Colonization and Biofilm Development in Marine Environments.

Authors:  Hongyue Dang; Charles R Lovell
Journal:  Microbiol Mol Biol Rev       Date:  2015-12-23       Impact factor: 11.056

4.  Genomic versatility and functional variation between two dominant heterotrophic symbionts of deep-sea Osedax worms.

Authors:  Shana K Goffredi; Hana Yi; Qingpeng Zhang; Jane E Klann; Isabelle A Struve; Robert C Vrijenhoek; C Titus Brown
Journal:  ISME J       Date:  2013-11-14       Impact factor: 10.302

5.  The genomic basis of trophic strategy in marine bacteria.

Authors:  Federico M Lauro; Diane McDougald; Torsten Thomas; Timothy J Williams; Suhelen Egan; Scott Rice; Matthew Z DeMaere; Lily Ting; Haluk Ertan; Justin Johnson; Steven Ferriera; Alla Lapidus; Iain Anderson; Nikos Kyrpides; A Christine Munk; Chris Detter; Cliff S Han; Mark V Brown; Frank T Robb; Staffan Kjelleberg; Ricardo Cavicchioli
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-08       Impact factor: 11.205

6.  Composition and enzymatic function of particle-associated and free-living bacteria: a coastal/offshore comparison.

Authors:  Lindsay D'Ambrosio; Kai Ziervogel; Barbara MacGregor; Andreas Teske; Carol Arnosti
Journal:  ISME J       Date:  2014-04-24       Impact factor: 10.302

7.  Species richness and adaptation of marine fungi from deep-subseafloor sediments.

Authors:  Vanessa Rédou; Marion Navarri; Laurence Meslet-Cladière; Georges Barbier; Gaëtan Burgaud
Journal:  Appl Environ Microbiol       Date:  2015-03-13       Impact factor: 4.792

8.  Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype.

Authors:  J Cameron Thrash; Ben Temperton; Brandon K Swan; Zachary C Landry; Tanja Woyke; Edward F DeLong; Ramunas Stepanauskas; Stephan J Giovannoni
Journal:  ISME J       Date:  2014-01-23       Impact factor: 10.302

9.  Antimicrobial potential of deep surface sediment associated bacteria from the Sea of Japan.

Authors:  Lyudmila A Romanenko; Naoto Tanaka; Natalia I Kalinovskaya; Valery V Mikhailov
Journal:  World J Microbiol Biotechnol       Date:  2013-02-06       Impact factor: 3.312

10.  Deep-sea biodiversity in the Mediterranean Sea: the known, the unknown, and the unknowable.

Authors:  Roberto Danovaro; Joan Batista Company; Cinzia Corinaldesi; Gianfranco D'Onghia; Bella Galil; Cristina Gambi; Andrew J Gooday; Nikolaos Lampadariou; Gian Marco Luna; Caterina Morigi; Karine Olu; Paraskevi Polymenakou; Eva Ramirez-Llodra; Anna Sabbatini; Francesc Sardà; Myriam Sibuet; Anastasios Tselepides
Journal:  PLoS One       Date:  2010-08-02       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.