Literature DB >> 17158629

The unique 16S rRNA genes of piezophiles reflect both phylogeny and adaptation.

Federico M Lauro1, Roger A Chastain, Lesley E Blankenship, A Aristides Yayanos, Douglas H Bartlett.   

Abstract

In the ocean's most extreme depths, pressures of 70 to 110 megapascals prevent the growth of all but the most hyperpiezophilic (pressure-loving) organisms. The physiological adaptations required for growth under these conditions are considered to be substantial. Efforts to determine specific adaptations permitting growth at extreme pressures have thus far focused on relatively few gamma-proteobacteria, in part due to the technical difficulties of obtaining piezophilic bacteria in pure culture. Here, we present the molecular phylogenies of several new piezophiles of widely differing geographic origins. Included are results from an analysis of the first deep-trench bacterial isolates recovered from the southern hemisphere (9.9-km depth) and of the first gram-positive piezophilic strains. These new data allowed both phylogenetic and structural 16S rRNA comparisons among deep-ocean trench piezophiles and closely related strains not adapted to high pressure. Our results suggest that (i) the Circumpolar Deep Water acts as repository for hyperpiezophiles and drives their dissemination to deep trenches in the Pacific Ocean and (ii) the occurrence of elongated helices in the 16S rRNA genes increases with the extent of adaptation to growth at elevated pressure. These helix changes are believed to improve ribosome function under deep-sea conditions.

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Year:  2006        PMID: 17158629      PMCID: PMC1800765          DOI: 10.1128/AEM.01726-06

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  52 in total

Review 1.  Microbial life at high temperature, the challenges, the strategies.

Authors:  D Charlier; L Droogmans
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2.  Archaea in coastal marine environments.

Authors:  E F DeLong
Journal:  Proc Natl Acad Sci U S A       Date:  1992-06-15       Impact factor: 11.205

3.  In vitro increases in plasmid DNA supercoiling by hydrostatic pressure.

Authors:  G Q Tang; N Tanaka; S Kunugi
Journal:  Biochim Biophys Acta       Date:  1998-12-22

4.  capA, a cspA-like gene that encodes a cold acclimation protein in the psychrotrophic bacterium Arthrobacter globiformis SI55.

Authors:  F Berger; P Normand; P Potier
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Review 5.  Pressure stability of proteins.

Authors:  J L Silva; G Weber
Journal:  Annu Rev Phys Chem       Date:  1993       Impact factor: 12.703

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Authors:  J J Dalluge; T Hamamoto; K Horikoshi; R Y Morita; K O Stetter; J A McCloskey
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Authors:  J V Landau; W P Smith; D H Pope
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Authors:  P D Franzmann; P Höpfl; N Weiss; B J Tindall
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