Literature DB >> 16779137

Of mice and men: design of a comparative anatomy information system.

Ravensara S Travillian1, John H Gennari, Linda G Shapiro.   

Abstract

In previous work, we proposed an approach called the Structural Difference Method (SDM) to correlating the anatomy of Homo sapiens with selected species, using the Foundational Model of Anatomy (FMA) as a framework and graph matching as a method, for determining similarities and differences between species. In this paper, we present the design of a comparative anatomy information system that utilizes the SDM and allows users to issue queries to determine the similarities and differences between two species. Our system will serve as a pilot project for cross-species anatomical information collection, storage, and retrieval. The underlying data structure of a mapping, and the syntax and semantics of the system's query language, are presented.

Entities:  

Mesh:

Year:  2005        PMID: 16779137      PMCID: PMC1560542     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  9 in total

1.  Conceptualization of anatomical spatial entities in the Digital Anatomist Foundational Model.

Authors:  J L Mejino; C Rosse
Journal:  Proc AMIA Symp       Date:  1999

2.  A reference ontology for biomedical informatics: the Foundational Model of Anatomy.

Authors:  Cornelius Rosse; José L V Mejino
Journal:  J Biomed Inform       Date:  2003-12       Impact factor: 6.317

3.  Protégé-2000: an open-source ontology-development and knowledge-acquisition environment.

Authors:  Natalya F Noy; Monica Crubezy; Ray W Fergerson; Holger Knublauch; Samson W Tu; Jennifer Vendetti; Mark A Musen
Journal:  AMIA Annu Symp Proc       Date:  2003

4.  Processes and problems in the formative evaluation of an interface to the Foundational Model of Anatomy knowledge base.

Authors:  Linda G Shapiro; Emily Chung; Landon T Detwiler; José L V Mejino; Augusto V Agoncillo; James F Brinkley; Cornelius Rosse
Journal:  J Am Med Inform Assoc       Date:  2004-10-18       Impact factor: 4.497

5.  The digital anatomist foundational model: principles for defining and structuring its concept domain.

Authors:  C Rosse; L G Shapiro; J F Brinkley
Journal:  Proc AMIA Symp       Date:  1998

Review 6.  Recent failures of new potential symptomatic treatments for Parkinson's disease: causes and solutions.

Authors:  Gurutz Linazasoro
Journal:  Mov Disord       Date:  2004-07       Impact factor: 10.338

7.  An approach to the anatomical correlation of species through the Foundational Model of Anatomy.

Authors:  Ravensara S Travillian; Cornelius Rosse; Linda G Shapiro
Journal:  AMIA Annu Symp Proc       Date:  2003

Review 8.  The complex identity of brain tumors: emerging concerns regarding origin, diversity and plasticity.

Authors:  Mark Noble; Joerg Dietrich
Journal:  Trends Neurosci       Date:  2004-03       Impact factor: 13.837

9.  The Adult Mouse Anatomical Dictionary: a tool for annotating and integrating data.

Authors:  Terry F Hayamizu; Mary Mangan; John P Corradi; James A Kadin; Martin Ringwald
Journal:  Genome Biol       Date:  2005-02-15       Impact factor: 13.583

  9 in total
  5 in total

1.  Alignment of multiple ontologies of anatomy: deriving indirect mappings from direct mappings to a reference.

Authors:  Songmao Zhang; Olivier Bodenreider
Journal:  AMIA Annu Symp Proc       Date:  2005

2.  A graphical user interface for a comparative anatomy information system: design, implementation and usage scenarios.

Authors:  Ravensara S Travillian; Kremena Diatchka; Tejinder K Judge; Katarzyna Wilamowska; Linda G Shapiro
Journal:  AMIA Annu Symp Proc       Date:  2006

3.  Experience in Aligning Anatomical Ontologies.

Authors:  Songmao Zhang; Olivier Bodenreider
Journal:  Int J Semant Web Inf Syst       Date:  2007       Impact factor: 0.843

4.  Of mice and men: aligning mouse and human anatomies.

Authors:  Olivier Bodenreider; Terry F Hayamizu; Martin Ringwald; Sherri De Coronado; Songmao Zhang
Journal:  AMIA Annu Symp Proc       Date:  2005

5.  An ontology-based comparative anatomy information system.

Authors:  Ravensara S Travillian; Kremena Diatchka; Tejinder K Judge; Katarzyna Wilamowska; Linda G Shapiro
Journal:  Artif Intell Med       Date:  2010-12-10       Impact factor: 5.326

  5 in total

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