Literature DB >> 14728458

Protégé-2000: an open-source ontology-development and knowledge-acquisition environment.

Natalya F Noy1, Monica Crubezy, Ray W Fergerson, Holger Knublauch, Samson W Tu, Jennifer Vendetti, Mark A Musen.   

Abstract

Protégé-2000 is an open-source tool that assists users in the construction of large electronic knowledge bases. It has an intuitive user interface that enables developers to create and edit domain ontologies. Numerous plugins provide alternative visualization mechanisms, enable management of multiple ontologies, allow the use of interference engines and problem solvers with Protégé ontologies, and provide other functionality. The Protégé user community has more than 7000 members.

Mesh：

Year:  2003        PMID： 14728458      PMCID： PMC1480139     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN： 1559-4076


  47 in total

1.  Creating an ontology-based human phenotyping system: The Rockefeller University bleeding history experience.

Authors:  Andreas C Mauer; Edward M Barbour; Nickolay A Khazanov; Natasha Levenkova; Shamim A Mollah; Barry S Coller
Journal:  Clin Transl Sci       Date:  2009-10       Impact factor: 4.689

2.  Quantifying visual similarity in clinical iconic graphics.

Authors:  Philip R O Payne; Justin B Starren
Journal:  J Am Med Inform Assoc       Date:  2005-01-31       Impact factor: 4.497

3.  MachineProse: an ontological framework for scientific assertions.

Authors:  Deendayal Dinakarpandian; Yugyung Lee; Kartik Vishwanath; Rohini Lingambhotla
Journal:  J Am Med Inform Assoc       Date:  2005-12-15       Impact factor: 4.497

Review 4.  Development of FuGO: an ontology for functional genomics investigations.

Authors:  Patricia L Whetzel; Ryan R Brinkman; Helen C Causton; Liju Fan; Dawn Field; Jennifer Fostel; Gilberto Fragoso; Tanya Gray; Mervi Heiskanen; Tina Hernandez-Boussard; Norman Morrison; Helen Parkinson; Philippe Rocca-Serra; Susanna-Assunta Sansone; Daniel Schober; Barry Smith; Robert Stevens; Christian J Stoeckert; Chris Taylor; Joe White; Andrew Wood
Journal:  OMICS       Date:  2006

5.  Reactome pathway analysis to enrich biological discovery in proteomics data sets.

Authors:  Robin Haw; Henning Hermjakob; Peter D'Eustachio; Lincoln Stein
Journal:  Proteomics       Date:  2011-09       Impact factor: 3.984

6.  The RNA Ontology Consortium: an open invitation to the RNA community.

Authors:  Neocles B Leontis; Russ B Altman; Helen M Berman; Steven E Brenner; James W Brown; David R Engelke; Stephen C Harvey; Stephen R Holbrook; Fabrice Jossinet; Suzanna E Lewis; François Major; David H Mathews; Jane S Richardson; James R Williamson; Eric Westhof
Journal:  RNA       Date:  2006-02-16       Impact factor: 4.942

7.  The Extensible Neuroimaging Archive Toolkit: an informatics platform for managing, exploring, and sharing neuroimaging data.

Authors:  Daniel S Marcus; Timothy R Olsen; Mohana Ramaratnam; Randy L Buckner
Journal:  Neuroinformatics       Date:  2007

Review 8.  Conceptual knowledge acquisition in biomedicine: A methodological review.

Authors:  Philip R O Payne; Eneida A Mendonça; Stephen B Johnson; Justin B Starren
Journal:  J Biomed Inform       Date:  2007-03-27       Impact factor: 6.317

9.  A collaborative knowledge base for cognitive phenomics.

Authors:  F W Sabb; C E Bearden; D C Glahn; D S Parker; N Freimer; R M Bilder
Journal:  Mol Psychiatry       Date:  2008-01-08       Impact factor: 15.992

10.  A bioinformatics analysis of the cell line nomenclature.

Authors:  Sirarat Sarntivijai; Alexander S Ade; Brian D Athey; David J States
Journal:  Bioinformatics       Date:  2008-10-10       Impact factor: 6.937
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