Literature DB >> 16774363

Revisiting the hexane-water interface via molecular dynamics simulations using nonadditive alkane-water potentials.

Sandeep A Patel1, Charles L Brooks.   

Abstract

We present results addressing properties of a polarizable force field for hexane based on the fluctuating charge (FQ) formalism and developed in conjunction with the Chemistry at Harvard Molecular Mechanics (CHARMM) potential function. Properties of bulk neat hexane, its liquid-vapor interface, and its interface with a polarizable water model (TIP4P-FQ) are discussed. The FQ model is compared to a recently modified alkane model, C27r, also based on the CHARMM potential energy function. With respect to bulk properties, both models predict bulk density within 1%; the FQ model predicts the liquid vaporization enthalpy within 2%, while the C27r force field underestimates the property by roughly 20% (and in this sense reflects the quality of the C27r force field across the spectrum of linear and branched alkanes). The FQ hexane model realistically captures the dielectric properties of the bulk in terms of a dielectric constant of 1.94, in excellent agreement with experimental values in the range of 1.9-2.02. This behavior is also in conformity with a recent polarizable alkane model based on Drude oscillators. Furthermore, the bulk dielectric is essentially captured in the infinite frequency, or optical, dielectric contribution. The FQ model is in this respect a more realistic force field for modeling lipid bilayer interiors for which most current state-of-the-art force fields do not accurately capture the dielectric environment. The molecular polarizability of the FQ model is 11.79 A3, in good agreement with the range of experimental and ab initio values. In contrast to FQ models of polar solvents such as alcohols and water, there was no need to scale gas-phase polarizabilities in order to avoid polarization catastrophes in the pure bulk. In terms of the liquid-vapor and liquid-liquid interfaces, the FQ model displays a rich orientational structure of alkane and water in the respective interfacial systems, in general conforming with earlier simulation studies of such interfaces. The FQ force field shows a marked deviation in the interfacial dipole potentials computed from the charge densities averaged over simulation trajectories. At the liquid-vapor interface, the FQ model predicts a potential drop of -178.71 mV in contrast to the C27r estimate of -433.80 mV. For the hexane-water interface, the FQ force field predicts a dipole potential drop of -379.40 mV in contrast to the C27r value of -105.42 mV. Although the surface dipole potential predicted by the FQ model is roughly 3.5 times that predicted by the C27r potential, it is consistent with reported experimental potentials across solvated lipid bilayers in the range of 400-600 mV.

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Year:  2006        PMID: 16774363     DOI: 10.1063/1.2198538

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  11 in total

Review 1.  CHARMM: the biomolecular simulation program.

Authors:  B R Brooks; C L Brooks; A D Mackerell; L Nilsson; R J Petrella; B Roux; Y Won; G Archontis; C Bartels; S Boresch; A Caflisch; L Caves; Q Cui; A R Dinner; M Feig; S Fischer; J Gao; M Hodoscek; W Im; K Kuczera; T Lazaridis; J Ma; V Ovchinnikov; E Paci; R W Pastor; C B Post; J Z Pu; M Schaefer; B Tidor; R M Venable; H L Woodcock; X Wu; W Yang; D M York; M Karplus
Journal:  J Comput Chem       Date:  2009-07-30       Impact factor: 3.376

2.  On the origin of the electrostatic potential difference at a liquid-vacuum interface.

Authors:  Edward Harder; Benoît Roux
Journal:  J Chem Phys       Date:  2008-12-21       Impact factor: 3.488

3.  Molecular modeling and dynamics studies with explicit inclusion of electronic polarizability. Theory and applications.

Authors:  Pedro E M Lopes; Benoit Roux; Alexander D Mackerell
Journal:  Theor Chem Acc       Date:  2009-09       Impact factor: 1.702

4.  Phase-transfer energetics of small-molecule alcohols across the water-hexane interface: molecular dynamics simulations using charge equilibration models.

Authors:  Brad A Bauer; Yang Zhong; David J Meninger; Joseph E Davis; Sandeep Patel
Journal:  J Mol Graph Model       Date:  2010-10-01       Impact factor: 2.518

5.  Polarization effects in molecular mechanical force fields.

Authors:  Piotr Cieplak; François-Yves Dupradeau; Yong Duan; Junmei Wang
Journal:  J Phys Condens Matter       Date:  2009-07-24       Impact factor: 2.333

Review 6.  Charge equilibration force fields for molecular dynamics simulations of lipids, bilayers, and integral membrane protein systems.

Authors:  Timothy R Lucas; Brad A Bauer; Sandeep Patel
Journal:  Biochim Biophys Acta       Date:  2011-09-24

7.  Predicting Partition Coefficients of Neutral and Charged Solutes in the Mixed SLES-Fatty Acid Micellar System.

Authors:  Mattia Turchi; Abhishek A Kognole; Anmol Kumar; Qiong Cai; Guoping Lian; Alexander D MacKerell
Journal:  J Phys Chem B       Date:  2020-02-25       Impact factor: 2.991

8.  Incorporating Phase-Dependent Polarizability in Non-Additive Electrostatic Models for Molecular Dynamics Simulations of the Aqueous Liquid-Vapor Interface.

Authors:  Brad A Bauer; G Lee Warren; Sandeep Patel
Journal:  J Chem Theory Comput       Date:  2009-01-08       Impact factor: 6.006

9.  Molecular dynamics simulations of a DMPC bilayer using nonadditive interaction models.

Authors:  Joseph E Davis; Obaidur Rahaman; Sandeep Patel
Journal:  Biophys J       Date:  2009-01       Impact factor: 4.033

10.  Charge equilibration force fields for lipid environments: applications to fully hydrated DPPC bilayers and DMPC-embedded gramicidin A.

Authors:  Joseph E Davis; Sandeep Patel
Journal:  J Phys Chem B       Date:  2009-07-09       Impact factor: 2.991

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