Literature DB >> 16772263

Metabolomics Standards Workshop and the development of international standards for reporting metabolomics experimental results.

Arthur L Castle1, Oliver Fiehn, Rima Kaddurah-Daouk, John C Lindon.   

Abstract

Informatics standards and controlled vocabularies are essential for allowing information technology to help exchange, manage, interpret and compare large data collections. In a rapidly evolving field, the challenge is to work out how best to describe, but not prescribe, the use of these technologies and methods. A Metabolomics Standards Workshop was held by the US National Institutes of Health (NIH) to bring together multiple ongoing standards efforts in metabolomics with the NIH research community. The goals were to discuss metabolomics workflows (methods, technologies and data treatments) and the needs, challenges and potential approaches to developing a Metabolomics Standards Initiative that will help facilitate this rapidly growing field which has been a focus of the NIH roadmap effort. This report highlights specific aspects of what was presented and discussed at the 1st and 2nd August 2005 Metabolomics Standards Workshop.

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Year:  2006        PMID: 16772263     DOI: 10.1093/bib/bbl008

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  27 in total

Review 1.  New mass spectrometry technologies contributing towards comprehensive and high throughput omics analyses of single cells.

Authors:  Sneha P Couvillion; Ying Zhu; Gabe Nagy; Joshua N Adkins; Charles Ansong; Ryan S Renslow; Paul D Piehowski; Yehia M Ibrahim; Ryan T Kelly; Thomas O Metz
Journal:  Analyst       Date:  2019-01-28       Impact factor: 4.616

Review 2.  Metabonomics techniques and applications to pharmaceutical research & development.

Authors:  John C Lindon; Elaine Holmes; Jeremy K Nicholson
Journal:  Pharm Res       Date:  2006-05-25       Impact factor: 4.200

Review 3.  Biomarkers in nutritional epidemiology: applications, needs and new horizons.

Authors:  Mazda Jenab; Nadia Slimani; Magda Bictash; Pietro Ferrari; Sheila A Bingham
Journal:  Hum Genet       Date:  2009-04-09       Impact factor: 4.132

4.  The future of liquid chromatography-mass spectrometry (LC-MS) in metabolic profiling and metabolomic studies for biomarker discovery.

Authors:  Thomas O Metz; Qibin Zhang; Jason S Page; Yufeng Shen; Stephen J Callister; Jon M Jacobs; Richard D Smith
Journal:  Biomark Med       Date:  2007-06       Impact factor: 2.851

Review 5.  Metabolomics, pathway regulation, and pathway discovery.

Authors:  Guo-Fang Zhang; Sushabhan Sadhukhan; Gregory P Tochtrop; Henri Brunengraber
Journal:  J Biol Chem       Date:  2011-05-12       Impact factor: 5.157

6.  ISiCLE: A Quantum Chemistry Pipeline for Establishing in Silico Collision Cross Section Libraries.

Authors:  Sean M Colby; Dennis G Thomas; Jamie R Nuñez; Douglas J Baxter; Kurt R Glaesemann; Joseph M Brown; Meg A Pirrung; Niranjan Govind; Justin G Teeguarden; Thomas O Metz; Ryan S Renslow
Journal:  Anal Chem       Date:  2019-03-06       Impact factor: 6.986

7.  The ABRF Metabolomics Research Group 2013 Study: Investigation of Spiked Compound Differences in a Human Plasma Matrix.

Authors:  Amrita K Cheema; John M Asara; Yiwen Wang; Thomas A Neubert; Vladimir Tolstikov; Chris W Turck
Journal:  J Biomol Tech       Date:  2015-09

8.  Recent advances in plant metabolomics and greener pastures.

Authors:  Lloyd W Sumner
Journal:  F1000 Biol Rep       Date:  2010-01-27

Review 9.  The role of mass spectrometry-based metabolomics in medical countermeasures against radiation.

Authors:  Andrew D Patterson; Christian Lanz; Frank J Gonzalez; Jeffrey R Idle
Journal:  Mass Spectrom Rev       Date:  2010 May-Jun       Impact factor: 10.946

10.  Metabolomics applied to diabetes research: moving from information to knowledge.

Authors:  James R Bain; Robert D Stevens; Brett R Wenner; Olga Ilkayeva; Deborah M Muoio; Christopher B Newgard
Journal:  Diabetes       Date:  2009-11       Impact factor: 9.461

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