Literature DB >> 21566142

Metabolomics, pathway regulation, and pathway discovery.

Guo-Fang Zhang1, Sushabhan Sadhukhan, Gregory P Tochtrop, Henri Brunengraber.   

Abstract

Metabolomics is a data-based research strategy, the aims of which are to identify biomarker pictures of metabolic systems and metabolic perturbations and to formulate hypotheses to be tested. It involves the assay by mass spectrometry or NMR of many metabolites present in the biological system investigated. In this minireview, we outline studies in which metabolomics led to useful biomarkers of metabolic processes. We also illustrate how the discovery potential of metabolomics is enhanced by associating it with stable isotopic techniques.

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Year:  2011        PMID: 21566142      PMCID: PMC3129142          DOI: 10.1074/jbc.R110.171405

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  33 in total

1.  Visualizing plant metabolomic correlation networks using clique-metabolite matrices.

Authors:  F Kose; W Weckwerth; T Linke; O Fiehn
Journal:  Bioinformatics       Date:  2001-12       Impact factor: 6.937

Review 2.  Metabolomics--the link between genotypes and phenotypes.

Authors:  Oliver Fiehn
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

3.  Effects of aminooxyacetate on the metabolism of isolated liver cells.

Authors:  R Rognstad; D G Clark
Journal:  Arch Biochem Biophys       Date:  1974-04-02       Impact factor: 4.013

4.  Differential metabolomics reveals ophthalmic acid as an oxidative stress biomarker indicating hepatic glutathione consumption.

Authors:  Tomoyoshi Soga; Richard Baran; Makoto Suematsu; Yuki Ueno; Satsuki Ikeda; Tadayuki Sakurakawa; Yuji Kakazu; Takamasa Ishikawa; Martin Robert; Takaaki Nishioka; Masaru Tomita
Journal:  J Biol Chem       Date:  2006-04-11       Impact factor: 5.157

5.  Using isotopic tools to dissect and quantitate parallel metabolic pathways.

Authors:  Sushabhan Sadhukhan; Yong Han; Guo-Fang Zhang; Henri Brunengraber; Gregory P Tochtrop
Journal:  J Am Chem Soc       Date:  2010-05-12       Impact factor: 15.419

6.  Reversibility of the mitochondrial isocitrate dehydrogenase reaction in the perfused rat liver. Evidence from isotopomer analysis of citric acid cycle intermediates.

Authors:  C Des Rosiers; C A Fernandez; F David; H Brunengraber
Journal:  J Biol Chem       Date:  1994-11-04       Impact factor: 5.157

7.  Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression.

Authors:  Arun Sreekumar; Laila M Poisson; Thekkelnaycke M Rajendiran; Amjad P Khan; Qi Cao; Jindan Yu; Bharathi Laxman; Rohit Mehra; Robert J Lonigro; Yong Li; Mukesh K Nyati; Aarif Ahsan; Shanker Kalyana-Sundaram; Bo Han; Xuhong Cao; Jaeman Byun; Gilbert S Omenn; Debashis Ghosh; Subramaniam Pennathur; Danny C Alexander; Alvin Berger; Jeffrey R Shuster; John T Wei; Sooryanarayana Varambally; Christopher Beecher; Arul M Chinnaiyan
Journal:  Nature       Date:  2009-02-12       Impact factor: 49.962

8.  Catabolism of 4-hydroxyacids and 4-hydroxynonenal via 4-hydroxy-4-phosphoacyl-CoAs.

Authors:  Guo-Fang Zhang; Rajan S Kombu; Takhar Kasumov; Yong Han; Sushabhan Sadhukhan; Jianye Zhang; Lawrence M Sayre; Dale Ray; K Michael Gibson; Vernon A Anderson; Gregory P Tochtrop; Henri Brunengraber
Journal:  J Biol Chem       Date:  2009-09-15       Impact factor: 5.157

9.  Metabolomic and mass isotopomer analysis of liver gluconeogenesis and citric acid cycle: II. Heterogeneity of metabolite labeling pattern.

Authors:  Lili Yang; Takhar Kasumov; Rajan S Kombu; Shu-Han Zhu; Andrea V Cendrowski; France David; Vernon E Anderson; Joanne K Kelleher; Henri Brunengraber
Journal:  J Biol Chem       Date:  2008-06-10       Impact factor: 5.157

10.  Combining genomics, metabolome analysis, and biochemical modelling to understand metabolic networks.

Authors:  O Fiehn
Journal:  Comp Funct Genomics       Date:  2001
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  24 in total

Review 1.  Stable isotope-resolved metabolomics and applications for drug development.

Authors:  Teresa W-M Fan; Pawel K Lorkiewicz; Katherine Sellers; Hunter N B Moseley; Richard M Higashi; Andrew N Lane
Journal:  Pharmacol Ther       Date:  2011-12-23       Impact factor: 12.310

2.  Stable isotopes and LC-MS for monitoring metabolic disturbances in Friedreich's ataxia platelets.

Authors:  Andrew J Worth; Sankha S Basu; Eric C Deutsch; Wei-Ting Hwang; Nathaniel W Snyder; David R Lynch; Ian A Blair
Journal:  Bioanalysis       Date:  2015       Impact factor: 2.681

3.  Inhibition of neuronal cell mitochondrial complex I with rotenone increases lipid β-oxidation, supporting acetyl-coenzyme A levels.

Authors:  Andrew J Worth; Sankha S Basu; Nathaniel W Snyder; Clementina Mesaros; Ian A Blair
Journal:  J Biol Chem       Date:  2014-08-12       Impact factor: 5.157

4.  Metabolic tracing analysis reveals substrate-specific metabolic deficits in platelet storage lesion.

Authors:  Carrie Sims; Noelle Salliant; Andrew J Worth; Robert Parry; Clementina Mesaros; Ian A Blair; Nathaniel W Snyder
Journal:  Transfusion       Date:  2017-08-23       Impact factor: 3.157

5.  Metabolism of levulinate in perfused rat livers and live rats: conversion to the drug of abuse 4-hydroxypentanoate.

Authors:  Stephanie R Harris; Guo-Fang Zhang; Sushabhan Sadhukhan; Anne M Murphy; Kristyen A Tomcik; Edwin J Vazquez; Vernon E Anderson; Gregory P Tochtrop; Henri Brunengraber
Journal:  J Biol Chem       Date:  2010-12-01       Impact factor: 5.157

6.  Compartmentation of Metabolism of the C12-, C9-, and C5-n-dicarboxylates in Rat Liver, Investigated by Mass Isotopomer Analysis: ANAPLEROSIS FROM DODECANEDIOATE.

Authors:  Zhicheng Jin; Fang Bian; Kristyen Tomcik; Joanne K Kelleher; Guo-Fang Zhang; Henri Brunengraber
Journal:  J Biol Chem       Date:  2015-06-12       Impact factor: 5.157

7.  Phosphoryl transfer from α-d-glucose 1-phosphate catalyzed by Escherichia coli sugar-phosphate phosphatases of two protein superfamily types.

Authors:  Patricia Wildberger; Martin Pfeiffer; Lothar Brecker; Gerald N Rechberger; Ruth Birner-Gruenberger; Bernd Nidetzky
Journal:  Appl Environ Microbiol       Date:  2014-12-19       Impact factor: 4.792

8.  Isotopomer enrichment assay for very short chain fatty acids and its metabolic applications.

Authors:  Kristyen Tomcik; Rafael A Ibarra; Sushabhan Sadhukhan; Yong Han; Gregory P Tochtrop; Guo-Fang Zhang
Journal:  Anal Biochem       Date:  2010-11-26       Impact factor: 3.365

9.  Novel approach in LC-MS/MS using MRM to generate a full profile of acyl-CoAs: discovery of acyl-dephospho-CoAs.

Authors:  Qingling Li; Shenghui Zhang; Jessica M Berthiaume; Brigitte Simons; Guo-Fang Zhang
Journal:  J Lipid Res       Date:  2013-12-23       Impact factor: 5.922

10.  Methionine and Kynurenine Activate Oncogenic Kinases in Glioblastoma, and Methionine Deprivation Compromises Proliferation.

Authors:  Kamalakannan Palanichamy; Krishnan Thirumoorthy; Suman Kanji; Nicolaus Gordon; Rajbir Singh; John R Jacob; Nikhil Sebastian; Kevin T Litzenberg; Disha Patel; Emily Bassett; Brinda Ramasubramanian; Tim Lautenschlaeger; Steven M Fischer; Abhik Ray-Chaudhury; Arnab Chakravarti
Journal:  Clin Cancer Res       Date:  2016-03-02       Impact factor: 12.531

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