Literature DB >> 16771346

Determinations of 15N chemical shift anisotropy magnitudes in a uniformly 15N,13C-labeled microcrystalline protein by three-dimensional magic-angle spinning nuclear magnetic resonance spectroscopy.

Benjamin J Wylie1, W Trent Franks, Chad M Rienstra.   

Abstract

Amide 15N chemical shift anisotropy (CSA) tensors provide quantitative insight into protein structure and dynamics. Experimental determinations of 15N CSA tensors in biologically relevant molecules have typically been performed by NMR relaxation studies in solution, goniometric analysis of single-crystal spectra, or slow magic-angle spinning (MAS) NMR experiments of microcrystalline samples. Here we present measurements of 15N CSA tensor magnitudes in a protein of known structure by three-dimensional MAS solid-state NMR. Isotropic 15N, 13C alpha, and 13C' chemical shifts in two dimensions resolve site-specific backbone amide recoupled CSA line shapes in the third dimension. Application of the experiments to the 56-residue beta1 immunoglobulin binding domain of protein G (GB1) enabled 91 independent determinations of 15N tensors at 51 of the 55 backbone amide sites, for which 15N-13C alpha and/or 15N-13C' cross-peaks were resolved in the two-dimensional experiment. For 37 15N signals, both intra- and interresidue correlations were resolved, enabling direct comparison of two experimental data sets to enhance measurement precision. Systematic variations between beta-sheet and alpha-helix residues are observed; the average value for the anisotropy parameter, delta (delta = delta(zz) - delta(iso)), for alpha-helical residues is 6 ppm greater than that for the beta-sheet residues. The results show a variation in delta of 15N amide backbone sites between -77 and -115 ppm, with an average value of -103.5 ppm. Some sites (e.g., G41) display smaller anisotropy due to backbone dynamics. In contrast, we observe an unusually large 15N tensor for K50, a residue that has an atypical, positive value for the backbone phi torsion angle. To our knowledge, this is the most complete experimental analysis of 15N CSA magnitude to date in a solid protein. The availability of previous high-resolution crystal and solution NMR structures, as well as detailed solid-state NMR studies, will enhance the value of these measurements as a benchmark for the development of ab initio calculations of amide 15N shielding tensor magnitudes.

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Year:  2006        PMID: 16771346     DOI: 10.1021/jp060507h

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  32 in total

1.  Solid-state NMR spectroscopy of protein complexes.

Authors:  Shangjin Sun; Yun Han; Sivakumar Paramasivam; Si Yan; Amanda E Siglin; John C Williams; In-Ja L Byeon; Jinwoo Ahn; Angela M Gronenborn; Tatyana Polenova
Journal:  Methods Mol Biol       Date:  2012

Review 2.  Chemical shift tensor - the heart of NMR: Insights into biological aspects of proteins.

Authors:  Hazime Saitô; Isao Ando; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05-07       Impact factor: 9.795

3.  Solid-state NMR and density functional theory studies of ionization states of thiamin.

Authors:  Sivakumar Paramasivam; Anand Balakrishnan; Olga Dmitrenko; Amy Godert; Tadhg P Begley; Frank Jordan; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2010-12-22       Impact factor: 2.991

4.  Reversible sheet-turn conformational change of a cell-penetrating peptide in lipid bilayers studied by solid-state NMR.

Authors:  Yongchao Su; Rajeswari Mani; Tim Doherty; Alan J Waring; Mei Hong
Journal:  J Mol Biol       Date:  2008-06-10       Impact factor: 5.469

5.  Internal protein dynamics on ps to μs timescales as studied by multi-frequency (15)N solid-state NMR relaxation.

Authors:  Tatiana Zinkevich; Veniamin Chevelkov; Bernd Reif; Kay Saalwächter; Alexey Krushelnitsky
Journal:  J Biomol NMR       Date:  2013-09-19       Impact factor: 2.835

6.  Quantitative analysis of backbone motion in proteins using MAS solid-state NMR spectroscopy.

Authors:  Veniamin Chevelkov; Uwe Fink; Bernd Reif
Journal:  J Biomol NMR       Date:  2009-07-24       Impact factor: 2.835

7.  Accurate Backbone 13 C and 15 N Chemical Shift Tensors in Galectin-3 Determined by MAS NMR and QM/MM: Details of Structure and Environment Matter.

Authors:  Jodi Kraus; Rupal Gupta; Manman Lu; Angela M Gronenborn; Mikael Akke; Tatyana Polenova
Journal:  Chemphyschem       Date:  2020-06-04       Impact factor: 3.102

8.  Structure determination of a membrane protein in proteoliposomes.

Authors:  Bibhuti B Das; Henry J Nothnagel; George J Lu; Woo Sung Son; Ye Tian; Francesca M Marassi; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2012-01-23       Impact factor: 15.419

9.  Characterization of fibril dynamics on three timescales by solid-state NMR.

Authors:  Albert A Smith; Emilie Testori; Riccardo Cadalbert; Beat H Meier; Matthias Ernst
Journal:  J Biomol NMR       Date:  2016-07-16       Impact factor: 2.835

10.  Dipole tensor-based atomic-resolution structure determination of a nanocrystalline protein by solid-state NMR.

Authors:  W Trent Franks; Benjamin J Wylie; Heather L Frericks Schmidt; Andrew J Nieuwkoop; Rebecca-Maria Mayrhofer; Gautam J Shah; Daniel T Graesser; Chad M Rienstra
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-14       Impact factor: 11.205

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