Literature DB >> 16770610

Mathematical model for rhythmic protoplasmic movement in the true slime mold.

Ryo Kobayashi1, Atsushi Tero, Toshiyuki Nakagaki.   

Abstract

The plasmodium of the true slime mold Physarum polycephalum is a large amoeboid organism that displays "smart" behavior such as chemotaxis and the ability to solve mazes and geometrical puzzles. These amoeboid behaviors are based on the dynamics of the viscoelastic protoplasm and its biochemical rhythms. By incorporating both these aspects, we constructed a mathematical model for the dynamics of the organism as a first step towards understanding the relation between protoplasmic movement and its unusual abilities. We tested the validity of the model by comparing it with physiological observation. Our model reproduces fundamental characteristics of the spatio-temporal pattern of the rhythmic movement: (1) the antiphase oscillation between frontal tip and rear when the front is freely extending; (2) the asynchronous oscillation pattern when the front is not freely extending; and (3) the formation of protoplasmic mounds over a longer time scale. Both our model and physiological observation suggest that cell stiffness plays a primary role in plasmodial behaviors, in contrast to the conventional theory of coupled oscillator systems.

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Year:  2006        PMID: 16770610     DOI: 10.1007/s00285-006-0007-0

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  16 in total

1.  Path finding by tube morphogenesis in an amoeboid organism.

Authors:  T Nakagaki; H Yamada; A Tóth
Journal:  Biophys Chem       Date:  2001-08-30       Impact factor: 2.352

2.  Smart network solutions in an amoeboid organism.

Authors:  Toshiyuki Nakagaki; Hiroyasu Yamada; Masahiko Hara
Journal:  Biophys Chem       Date:  2004-01-01       Impact factor: 2.352

3.  Contraction-relaxation cycle of Physarum cytoplasm: concomitant changes in intraplasmodial ATP and Ca++ concentrations.

Authors:  N Kamiya; Y Yoshimoto; F Matsumura
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1982

4.  Immunocytochemistry of the acellular slime mold Physarum polycephalum. II. Spatial organization of cytoplasmic actin.

Authors:  W Naib-Majani; W Stockem; K E Wohlfarth-Bottermann; M Osborn; K Weber
Journal:  Eur J Cell Biol       Date:  1982-08       Impact factor: 4.492

5.  Reaction-diffusion-advection model for pattern formation of rhythmic contraction in a giant amoeboid cell of the physarum plasmodium

Authors: 
Journal:  J Theor Biol       Date:  1999-04-21       Impact factor: 2.691

Review 6.  Calcium regulation of the actin-myosin interaction of Physarum polycephalum.

Authors:  A Nakamura; K Kohama
Journal:  Int Rev Cytol       Date:  1999

7.  Spatial and temporal organization of intracellular adenine nucleotides and cyclic nucleotides in relation to rhythmic motility in Physarum plasmodium.

Authors:  T Ueda; K Matsumoto; T Akitaya; Y Kobatake
Journal:  Exp Cell Res       Date:  1986-02       Impact factor: 3.905

8.  Mechanics of cytogels I: oscillations in physarum.

Authors:  G F Oster; G M Odell
Journal:  Cell Motil       Date:  1984

9.  Simultaneous oscillations of Ca2+ efflux and tension generation in the permealized plasmodial strand of Physarum.

Authors:  Y Yoshimoto; F Matsumura; N Kamiya
Journal:  Cell Motil       Date:  1981

10.  Cyclic production of tension force in the plasmodial strand of Physarum polycephalum and its relation to microfilament morphology.

Authors:  R Nagai; R N Yoshimoto; N Kamiya
Journal:  J Cell Sci       Date:  1978-10       Impact factor: 5.285

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  9 in total

1.  Speed-accuracy trade-offs during foraging decisions in the acellular slime mould Physarum polycephalum.

Authors:  Tanya Latty; Madeleine Beekman
Journal:  Proc Biol Sci       Date:  2010-09-08       Impact factor: 5.349

2.  Locomotive mechanism of Physarum plasmodia based on spatiotemporal analysis of protoplasmic streaming.

Authors:  Kenji Matsumoto; Seiji Takagi; Toshiyuki Nakagaki
Journal:  Biophys J       Date:  2007-12-07       Impact factor: 4.033

3.  Synchronized oscillation of the segmentation clock gene in vertebrate development.

Authors:  Koichiro Uriu; Yoshihiro Morishita; Yoh Iwasa
Journal:  J Math Biol       Date:  2009-09-16       Impact factor: 2.259

4.  Wavespeed in reaction-diffusion systems, with applications to chemotaxis and population pressure.

Authors:  Sanjeeva Balasuriya; Georg A Gottwald
Journal:  J Math Biol       Date:  2009-11-05       Impact factor: 2.259

5.  A revised model of fluid transport optimization in Physarum polycephalum.

Authors:  Vincenzo Bonifaci
Journal:  J Math Biol       Date:  2016-06-11       Impact factor: 2.259

6.  Adaptive behaviour and learning in slime moulds: the role of oscillations.

Authors:  Aurèle Boussard; Adrian Fessel; Christina Oettmeier; Léa Briard; Hans-Günther Döbereiner; Audrey Dussutour
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-01-25       Impact factor: 6.237

7.  Dispersion relation in oscillatory reaction-diffusion systems with self-consistent flow in true slime mold.

Authors:  H Yamada; T Nakagaki; R E Baker; P K Maini
Journal:  J Math Biol       Date:  2007-01-18       Impact factor: 2.164

8.  Decision-making without a brain: how an amoeboid organism solves the two-armed bandit.

Authors:  Chris R Reid; Hannelore MacDonald; Richard P Mann; James A R Marshall; Tanya Latty; Simon Garnier
Journal:  J R Soc Interface       Date:  2016-06       Impact factor: 4.118

9.  Connecting empirical phenomena and theoretical models of biological coordination across scales.

Authors:  Mengsen Zhang; Christopher Beetle; J A Scott Kelso; Emmanuelle Tognoli
Journal:  J R Soc Interface       Date:  2019-08-14       Impact factor: 4.118

  9 in total

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