Literature DB >> 19756608

Synchronized oscillation of the segmentation clock gene in vertebrate development.

Koichiro Uriu1, Yoshihiro Morishita2,3, Yoh Iwasa2.   

Abstract

In vertebrate somitogenesis, "segmentation clock" genes (her in zebrafish, hes in mouse, and hairy in chick) show oscillation, synchronized over nearby cells through intercellular interaction. In zebrafish, neighboring cells interact by Delta-Notch signaling to realize synchronization. Under Delta-Notch, however, a cell with a high expression of the segmentation clock gene tends to suppress its expression in adjacent cells, which might produce spatial heterogeneity instead of synchronized oscillation. Here we studied the conditions under which pre-somitic mesoderm cells show synchronized oscillation of gene expression mathematically. We adopted a model that explicitly considers the kinetics of the mRNA and proteins of the segmentation clock gene and cell-cell interaction via Delta-Notch signaling. From statistical study of a model with randomly generated parameters, we revealed how the likelihood that the system generates stable synchronized oscillation depends on the rate of each reaction in the gene-protein kinetics.

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Year:  2009        PMID: 19756608     DOI: 10.1007/s00285-009-0296-1

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  40 in total

Review 1.  The making of the somite: molecular events in vertebrate segmentation.

Authors:  Y Saga; H Takeda
Journal:  Nat Rev Genet       Date:  2001-11       Impact factor: 53.242

2.  Cellular oscillators in animal segmentation.

Authors:  Johannes Jaeger; Brian C Goodwin
Journal:  In Silico Biol       Date:  2002

3.  Autoinhibition with transcriptional delay: a simple mechanism for the zebrafish somitogenesis oscillator.

Authors:  Julian Lewis
Journal:  Curr Biol       Date:  2003-08-19       Impact factor: 10.834

Review 4.  From head to tail: links between the segmentation clock and antero-posterior patterning of the embryo.

Authors:  Julien Dubrulle; Olivier Pourquié
Journal:  Curr Opin Genet Dev       Date:  2002-10       Impact factor: 5.578

5.  Cell-based simulation of dynamic expression patterns in the presomitic mesoderm.

Authors:  Hendrik B Tiedemann; Elida Schneltzer; Stefan Zeiser; Isabel Rubio-Aliaga; Wolfgang Wurst; Johannes Beckers; Gerhard K H Przemeck; Martin Hrabé de Angelis
Journal:  J Theor Biol       Date:  2007-05-21       Impact factor: 2.691

6.  Mathematical modelling of juxtacrine cell signalling.

Authors:  M R Owen; J A Sherratt
Journal:  Math Biosci       Date:  1998-11       Impact factor: 2.144

7.  Oscillatory expression of the bHLH factor Hes1 regulated by a negative feedback loop.

Authors:  Hiromi Hirata; Shigeki Yoshiura; Toshiyuki Ohtsuka; Yasumasa Bessho; Takahiro Harada; Kenichi Yoshikawa; Ryoichiro Kageyama
Journal:  Science       Date:  2002-10-25       Impact factor: 47.728

8.  her1 and the notch pathway function within the oscillator mechanism that regulates zebrafish somitogenesis.

Authors:  Scott A Holley; Dörthe Jülich; Gerd-Jörg Rauch; Robert Geisler; Christiane Nüsslein-Volhard
Journal:  Development       Date:  2002-03       Impact factor: 6.868

9.  Oscillatory regulation of Hes1: Discrete stochastic delay modelling and simulation.

Authors:  Manuel Barrio; Kevin Burrage; André Leier; Tianhai Tian
Journal:  PLoS Comput Biol       Date:  2006-07-25       Impact factor: 4.475

10.  Notch signalling is required for cyclic expression of the hairy-like gene HES1 in the presomitic mesoderm.

Authors:  C Jouve; I Palmeirim; D Henrique; J Beckers; A Gossler; D Ish-Horowicz; O Pourquié
Journal:  Development       Date:  2000-04       Impact factor: 6.868

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  3 in total

1.  The kinetics in mathematical models on segmentation clock genes in zebrafish.

Authors:  Kuan-Wei Chen; Kang-Ling Liao; Chih-Wen Shih
Journal:  J Math Biol       Date:  2017-05-25       Impact factor: 2.259

Review 2.  A multi-cell, multi-scale model of vertebrate segmentation and somite formation.

Authors:  Susan D Hester; Julio M Belmonte; J Scott Gens; Sherry G Clendenon; James A Glazier
Journal:  PLoS Comput Biol       Date:  2011-10-06       Impact factor: 4.475

3.  Collective Oscillations in Coupled-Cell Systems.

Authors:  Kuan-Wei Chen; Chih-Wen Shih
Journal:  Bull Math Biol       Date:  2021-04-23       Impact factor: 1.758

  3 in total

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