Literature DB >> 16769895

Helices.

Nadia Chouaieb1, Alain Goriely, John H Maddocks.   

Abstract

Helices are among the simplest shapes that are observed in the filamentary and molecular structures of nature. The local mechanical properties of such structures are often modeled by a uniform elastic potential energy dependent on bending and twist, which is what we term a rod model. Our first result is to complete the semi-inverse classification, initiated by Kirchhoff, of all infinite, helical equilibria of inextensible, unshearable uniform rods with elastic energies that are a general quadratic function of the flexures and twist. Specifically, we demonstrate that all uniform helical equilibria can be found by means of an explicit planar construction in terms of the intersections of certain circles and hyperbolas. Second, we demonstrate that the same helical centerlines persist as equilibria in the presence of realistic distributed forces modeling nonlocal interactions as those that arise, for example, for charged linear molecules and for filaments of finite thickness exhibiting self-contact. Third, in the absence of any external loading, we demonstrate how to construct explicitly two helical equilibria, precisely one of each handedness, that are the only local energy minimizers subject to a nonconvex constraint of self-avoidance.

Mesh:

Year:  2006        PMID: 16769895      PMCID: PMC1480419          DOI: 10.1073/pnas.0508370103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  14 in total

1.  Elastic stability of DNA configurations. II. Supercoiled plasmids with self-contact.

Authors:  B D Coleman; D Swigon; I Tobias
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  2000-01

2.  Optimal shapes of compact strings.

Authors:  A Maritan; C Micheletti; A Trovato; J R Banavar
Journal:  Nature       Date:  2000-07-20       Impact factor: 49.962

3.  Tension-induced straightening transition of self-assembled helical ribbons.

Authors:  B Smith; Y V Zastavker; G B Benedek
Journal:  Phys Rev Lett       Date:  2001-12-10       Impact factor: 9.161

4.  Construction of bacterial flagella.

Authors:  C R Calladine
Journal:  Nature       Date:  1975-05-08       Impact factor: 49.962

5.  Twisted protein aggregates and disease: the stability of sickle hemoglobin fibers.

Authors:  M S Turner; R W Briehl; F A Ferrone; R Josephs
Journal:  Phys Rev Lett       Date:  2003-03-28       Impact factor: 9.161

6.  Entropically driven helix formation.

Authors:  Yehuda Snir; Randall D Kamien
Journal:  Science       Date:  2005-02-18       Impact factor: 47.728

7.  Elasticity theory for self-assembled protein lattices with application to the martensitic phase transition in bacteriophage T4 tail sheath.

Authors:  Wayne Falk; Richard D James
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-01-27

8.  Molecular modelling of (A4T4NN)n and (T4A4NN)n: sequence elements responsible for curvature.

Authors:  S R Sanghani; K Zakrzewska; S C Harvey; R Lavery
Journal:  Nucleic Acids Res       Date:  1996-05-01       Impact factor: 16.971

9.  Supercoiling transitions of closed DNA.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1994-03

10.  Lipid tubules: a paradigm for molecularly engineered structures.

Authors:  J M Schnur
Journal:  Science       Date:  1993-12-10       Impact factor: 47.728

View more
  10 in total

1.  Focused Echocardiography in Life Support: The Subcostal Window : What the Surgeon Should Know for Critical Care Applications.

Authors:  Raoul Breitkreutz; Felix Walcher; Hendrik Ilper; Florian H Seeger; Susanna Price; Gabriele Via; Holger Steiger
Journal:  Eur J Trauma Emerg Surg       Date:  2009-07-15       Impact factor: 3.693

2.  Molecular basis of the C-terminal tail-to-tail assembly of the sarcomeric filament protein myomesin.

Authors:  Nikos Pinotsis; Stephan Lange; Jean-Claude Perriard; Dmitri I Svergun; Matthias Wilmanns
Journal:  EMBO J       Date:  2007-12-06       Impact factor: 11.598

3.  Geometry of the nucleosomal DNA superhelix.

Authors:  Thomas C Bishop
Journal:  Biophys J       Date:  2008-04-18       Impact factor: 4.033

4.  Squeezed helical elastica.

Authors:  Lila Bouzar; Martin Michael Müller; Pierre Gosselin; Igor M Kulić; Hervé Mohrbach
Journal:  Eur Phys J E Soft Matter       Date:  2016-11-29       Impact factor: 1.890

5.  Microstructural characterization of vocal folds toward a strain-energy model of collagen remodeling.

Authors:  Amir K Miri; Hossein K Heris; Umakanta Tripathy; Paul W Wiseman; Luc Mongeau
Journal:  Acta Biomater       Date:  2013-05-03       Impact factor: 8.947

6.  Mechanical property of the helical configuration for a twisted intrinsically straight biopolymer.

Authors:  Zicong Zhou; Chen-Xu Wu
Journal:  Eur Biophys J       Date:  2019-03-27       Impact factor: 1.733

7.  Multiscale integration of environmental stimuli in plant tropism produces complex behaviors.

Authors:  Derek E Moulton; Hadrien Oliveri; Alain Goriely
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-03       Impact factor: 12.779

8.  Stenosis triggers spread of helical Pseudomonas biofilms in cylindrical flow systems.

Authors:  David R Espeso; Ana Carpio; Esteban Martínez-García; Victor de Lorenzo
Journal:  Sci Rep       Date:  2016-06-07       Impact factor: 4.379

9.  A tendril perversion in a helical oligomer: trapping and characterizing a mobile screw-sense reversal.

Authors:  Michael Tomsett; Irene Maffucci; Bryden A F Le Bailly; Liam Byrne; Stefan M Bijvoets; M Giovanna Lizio; James Raftery; Craig P Butts; Simon J Webb; Alessandro Contini; Jonathan Clayden
Journal:  Chem Sci       Date:  2017-01-25       Impact factor: 9.825

10.  A New Conceptual 'Cylinder' Framework for Sustainable Bioeconomy Systems and Their Actors.

Authors:  Hugo de Vries; Mechthild Donner; Monique Axelos
Journal:  J Agric Environ Ethics       Date:  2021-04-01       Impact factor: 1.727

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.