Literature DB >> 16760352

Creation and reduction of a morphologically detailed model of a leech heart interneuron.

Anne-Elise Tobin1, Stephen D Van Hooser, Ronald L Calabrese.   

Abstract

Conductance-based neuron models aid in understanding the role intrinsic and synaptic currents play in producing neuronal activity. Incorporating morphological detail into a model allows for additional analysis of nonhomogeneous distributions of active and synaptic conductances, as well as spatial segregation of electrical events. We developed a morphologically detailed "Full Model" of a leech heart interneuron that replicates reasonably well intracellular recordings from these interneurons. However, it constitutes hundreds of compartments, each increasing parameter space and simulation time. To reduce the number of compartments of the Full Model, while preserving conductance densities and distributions, its compartments were grouped into functional groups that each share identical conductance densities. Each functional group was sequentially reduced to one or two compartments, preserving surface area, conductance densities, and its contribution to input resistance. As a result, the input resistance and membrane time constant were preserved. The axial resistances of several compartments were rescaled to match the amplitude of synaptic currents and low-threshold calcium currents and the shape of action potentials to those in the Full Model. This reduced model, with intrinsic conductances, matched the activity of the Full Model for a variety of simulated current-clamp and voltage-clamp data. Because surface area and conductance distribution of the functional groups of the Full Model were maintained, parameter changes introduced into the reduced model can be directly translated to the Full Model. Thus our computationally efficient reduced morphology model can be used as a tool for exploring the parameter space of the Full Model and in network simulations.

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Year:  2006        PMID: 16760352      PMCID: PMC2897741          DOI: 10.1152/jn.00026.2006

Source DB:  PubMed          Journal:  J Neurophysiol        ISSN: 0022-3077            Impact factor:   2.714


  44 in total

1.  A model of a segmental oscillator in the leech heartbeat neuronal network.

Authors:  A A Hill; J Lu; M A Masino; O H Olsen; R L Calabrese
Journal:  J Comput Neurosci       Date:  2001 May-Jun       Impact factor: 1.621

2.  Detailed model of intersegmental coordination in the timing network of the leech heartbeat central pattern generator.

Authors:  Sami H Jezzini; Andrew A V Hill; Pavlo Kuzyk; Ronald L Calabrese
Journal:  J Neurophysiol       Date:  2003-10-22       Impact factor: 2.714

3.  An active membrane model of the cerebellar Purkinje cell. I. Simulation of current clamps in slice.

Authors:  E De Schutter; J M Bower
Journal:  J Neurophysiol       Date:  1994-01       Impact factor: 2.714

4.  Cable properties of a straight neurite of a leech neuron probed by a voltage-sensitive dye.

Authors:  P Fromherz; C O Müller
Journal:  Proc Natl Acad Sci U S A       Date:  1994-05-10       Impact factor: 11.205

5.  Modeling the leech heartbeat elemental oscillator. II. Exploring the parameter space.

Authors:  O H Olsen; F Nadim; R L Calabrese
Journal:  J Comput Neurosci       Date:  1995-09       Impact factor: 1.621

6.  Modeling the leech heartbeat elemental oscillator. I. Interactions of intrinsic and synaptic currents.

Authors:  F Nadim; O H Olsen; E De Schutter; R L Calabrese
Journal:  J Comput Neurosci       Date:  1995-09       Impact factor: 1.621

7.  Modulation of high-threshold transmission between heart interneurons of the medicinal leech by FMRF-NH2.

Authors:  T W Simon; J Schmidt; R L Calabrese
Journal:  J Neurophysiol       Date:  1994-02       Impact factor: 2.714

8.  A persistent sodium current contributes to oscillatory activity in heart interneurons of the medicinal leech.

Authors:  C A Opdyke; R L Calabrese
Journal:  J Comp Physiol A       Date:  1994-12       Impact factor: 1.836

9.  Distribution and developmental expression of octopamine-immunoreactive neurons in the central nervous system of the leech.

Authors:  L S Gilchrist; K A Klukas; J Jellies; J Rapus; M Eckert; K A Mesce
Journal:  J Comp Neurol       Date:  1995-03-13       Impact factor: 3.215

10.  Overexpression of a hyperpolarization-activated cation current (Ih) channel gene modifies the firing activity of identified motor neurons in a small neural network.

Authors:  Ying Zhang; Ricardo Oliva; Günter Gisselmann; Hanns Hatt; John Guckenheimer; Ronald M Harris-Warrick
Journal:  J Neurosci       Date:  2003-10-08       Impact factor: 6.167

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  19 in total

1.  Endogenous and half-center bursting in morphologically inspired models of leech heart interneurons.

Authors:  Anne-Elise Tobin; Ronald L Calabrese
Journal:  J Neurophysiol       Date:  2006-06-07       Impact factor: 2.714

2.  Automated evolutionary optimization of ion channel conductances and kinetics in models of young and aged rhesus monkey pyramidal neurons.

Authors:  Timothy H Rumbell; Danel Draguljić; Aniruddha Yadav; Patrick R Hof; Jennifer I Luebke; Christina M Weaver
Journal:  J Comput Neurosci       Date:  2016-04-22       Impact factor: 1.621

3.  The capabilities and limitations of conductance-based compartmental neuron models with reduced branched or unbranched morphologies and active dendrites.

Authors:  Eric B Hendrickson; Jeremy R Edgerton; Dieter Jaeger
Journal:  J Comput Neurosci       Date:  2010-07-10       Impact factor: 1.621

4.  Inactivating ion channels augment robustness of subthreshold intrinsic response dynamics to parametric variability in hippocampal model neurons.

Authors:  Rahul Kumar Rathour; Rishikesh Narayanan
Journal:  J Physiol       Date:  2012-08-28       Impact factor: 5.182

5.  Development of modified cable models to simulate accurate neuronal active behaviors.

Authors:  Sherif M Elbasiouny
Journal:  J Appl Physiol (1985)       Date:  2014-10-02

6.  Distinct current modules shape cellular dynamics in model neurons.

Authors:  Adel Alturki; Feng Feng; Ajay Nair; Vinay Guntu; Satish S Nair
Journal:  Neuroscience       Date:  2016-08-13       Impact factor: 3.590

7.  How multiple conductances determine electrophysiological properties in a multicompartment model.

Authors:  Adam L Taylor; Jean-Marc Goaillard; Eve Marder
Journal:  J Neurosci       Date:  2009-04-29       Impact factor: 6.167

8.  Drosophila Voltage-Gated Sodium Channels Are Only Expressed in Active Neurons and Are Localized to Distal Axonal Initial Segment-like Domains.

Authors:  Thomas A Ravenscroft; Jasper Janssens; Pei-Tseng Lee; Burak Tepe; Paul C Marcogliese; Samira Makhzami; Todd C Holmes; Stein Aerts; Hugo J Bellen
Journal:  J Neurosci       Date:  2020-09-14       Impact factor: 6.167

9.  Signal propagation in Drosophila central neurons.

Authors:  Nathan W Gouwens; Rachel I Wilson
Journal:  J Neurosci       Date:  2009-05-13       Impact factor: 6.167

10.  The role of linear and voltage-dependent ionic currents in the generation of slow wave oscillations.

Authors:  Amitabha Bose; Jorge Golowasch; Yinzheng Guan; Farzan Nadim
Journal:  J Comput Neurosci       Date:  2014-03-27       Impact factor: 1.621

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