Literature DB >> 20623167

The capabilities and limitations of conductance-based compartmental neuron models with reduced branched or unbranched morphologies and active dendrites.

Eric B Hendrickson1, Jeremy R Edgerton, Dieter Jaeger.   

Abstract

Conductance-based neuron models are frequently employed to study the dynamics of biological neural networks. For speed and ease of use, these models are often reduced in morphological complexity. Simplified dendritic branching structures may process inputs differently than full branching structures, however, and could thereby fail to reproduce important aspects of biological neural processing. It is not yet well understood which processing capabilities require detailed branching structures. Therefore, we analyzed the processing capabilities of full or partially branched reduced models. These models were created by collapsing the dendritic tree of a full morphological model of a globus pallidus (GP) neuron while preserving its total surface area and electrotonic length, as well as its passive and active parameters. Dendritic trees were either collapsed into single cables (unbranched models) or the full complement of branch points was preserved (branched models). Both reduction strategies allowed us to compare dynamics between all models using the same channel density settings. Full model responses to somatic inputs were generally preserved by both types of reduced model while dendritic input responses could be more closely preserved by branched than unbranched reduced models. However, features strongly influenced by local dendritic input resistance, such as active dendritic sodium spike generation and propagation, could not be accurately reproduced by any reduced model. Based on our analyses, we suggest that there are intrinsic differences in processing capabilities between unbranched and branched models. We also indicate suitable applications for different levels of reduction, including fast searches of full model parameter space.

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Year:  2010        PMID: 20623167      PMCID: PMC3058356          DOI: 10.1007/s10827-010-0258-z

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  38 in total

1.  A comparative survey of automated parameter-search methods for compartmental neural models.

Authors:  M C Vanier; J M Bower
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2.  Gap junctions between interneuron dendrites can enhance synchrony of gamma oscillations in distributed networks.

Authors:  R D Traub; N Kopell; A Bibbig; E H Buhl; F E LeBeau; M A Whittington
Journal:  J Neurosci       Date:  2001-12-01       Impact factor: 6.167

3.  Activity patterns in a model for the subthalamopallidal network of the basal ganglia.

Authors:  D Terman; J E Rubin; A C Yew; C J Wilson
Journal:  J Neurosci       Date:  2002-04-01       Impact factor: 6.167

4.  Similar network activity from disparate circuit parameters.

Authors:  Astrid A Prinz; Dirk Bucher; Eve Marder
Journal:  Nat Neurosci       Date:  2004-11-21       Impact factor: 24.884

Review 5.  Synaptic integration in dendritic trees.

Authors:  Allan T Gulledge; Björn M Kampa; Greg J Stuart
Journal:  J Neurobiol       Date:  2005-07

6.  A model of a CA3 hippocampal pyramidal neuron incorporating voltage-clamp data on intrinsic conductances.

Authors:  R D Traub; R K Wong; R Miles; H Michelson
Journal:  J Neurophysiol       Date:  1991-08       Impact factor: 2.714

Review 7.  The action potential in mammalian central neurons.

Authors:  Bruce P Bean
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8.  Alternative to hand-tuning conductance-based models: construction and analysis of databases of model neurons.

Authors:  Astrid A Prinz; Cyrus P Billimoria; Eve Marder
Journal:  J Neurophysiol       Date:  2003-08-27       Impact factor: 2.714

9.  Dendritic sodium spikes are variable triggers of axonal action potentials in hippocampal CA1 pyramidal neurons.

Authors:  N L Golding; N Spruston
Journal:  Neuron       Date:  1998-11       Impact factor: 17.173

10.  Modeling facilitation and inhibition of competing motor programs in basal ganglia subthalamic nucleus-pallidal circuits.

Authors:  Leonid L Rubchinsky; Nancy Kopell; Karen A Sigvardt
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-11       Impact factor: 11.205

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  20 in total

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Authors:  E Yu Smirnova; A V Zaitsev; K Kh Kim; A V Chizhov
Journal:  J Comput Neurosci       Date:  2015-08-18       Impact factor: 1.621

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3.  The use of automated parameter searches to improve ion channel kinetics for neural modeling.

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4.  Automated evolutionary optimization of ion channel conductances and kinetics in models of young and aged rhesus monkey pyramidal neurons.

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Journal:  J Comput Neurosci       Date:  2016-04-22       Impact factor: 1.621

5.  Development of modified cable models to simulate accurate neuronal active behaviors.

Authors:  Sherif M Elbasiouny
Journal:  J Appl Physiol (1985)       Date:  2014-10-02

6.  Virtual NEURON: a strategy for merged biochemical and electrophysiological modeling.

Authors:  Sherry-Ann Brown; Ion I Moraru; James C Schaff; Leslie M Loew
Journal:  J Comput Neurosci       Date:  2011-02-22       Impact factor: 1.621

7.  Distinct current modules shape cellular dynamics in model neurons.

Authors:  Adel Alturki; Feng Feng; Ajay Nair; Vinay Guntu; Satish S Nair
Journal:  Neuroscience       Date:  2016-08-13       Impact factor: 3.590

Review 8.  Computational implications of biophysical diversity and multiple timescales in neurons and synapses for circuit performance.

Authors:  Julijana Gjorgjieva; Guillaume Drion; Eve Marder
Journal:  Curr Opin Neurobiol       Date:  2016-01-15       Impact factor: 6.627

9.  An electrodiffusive neuron-extracellular-glia model for exploring the genesis of slow potentials in the brain.

Authors:  Marte J Sætra; Gaute T Einevoll; Geir Halnes
Journal:  PLoS Comput Biol       Date:  2021-07-16       Impact factor: 4.475

10.  A stepwise neuron model fitting procedure designed for recordings with high spatial resolution: Application to layer 5 pyramidal cells.

Authors:  Tuomo Mäki-Marttunen; Geir Halnes; Anna Devor; Christoph Metzner; Anders M Dale; Ole A Andreassen; Gaute T Einevoll
Journal:  J Neurosci Methods       Date:  2017-10-07       Impact factor: 2.390

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