Literature DB >> 16760304

Carbohydrate binding modules: biochemical properties and novel applications.

Oded Shoseyov1, Ziv Shani, Ilan Levy.   

Abstract

Polysaccharide-degrading microorganisms express a repertoire of hydrolytic enzymes that act in synergy on plant cell wall and other natural polysaccharides to elicit the degradation of often-recalcitrant substrates. These enzymes, particularly those that hydrolyze cellulose and hemicellulose, have a complex molecular architecture comprising discrete modules which are normally joined by relatively unstructured linker sequences. This structure is typically comprised of a catalytic module and one or more carbohydrate binding modules (CBMs) that bind to the polysaccharide. CBMs, by bringing the biocatalyst into intimate and prolonged association with its substrate, allow and promote catalysis. Based on their properties, CBMs are grouped into 43 families that display substantial variation in substrate specificity, along with other properties that make them a gold mine for biotechnologists who seek natural molecular "Velcro" for diverse and unusual applications. In this article, we review recent progress in the field of CBMs and provide an up-to-date summary of the latest developments in CBM applications.

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Year:  2006        PMID: 16760304      PMCID: PMC1489539          DOI: 10.1128/MMBR.00028-05

Source DB:  PubMed          Journal:  Microbiol Mol Biol Rev        ISSN: 1092-2172            Impact factor:   11.056


  165 in total

Review 1.  An overview of affinity chromatography.

Authors:  M Wilchek; I Chaiken
Journal:  Methods Mol Biol       Date:  2000

Review 2.  Production of new/modified proteins in transgenic plants.

Authors:  K Herbers; U Sonnewald
Journal:  Curr Opin Biotechnol       Date:  1999-04       Impact factor: 9.740

3.  Both binding sites of the starch-binding domain of Aspergillus niger glucoamylase are essential for inducing a conformational change in amylose.

Authors:  T Giardina; A P Gunning; N Juge; C B Faulds; C S Furniss; B Svensson; V J Morris; G Williamson
Journal:  J Mol Biol       Date:  2001-11-09       Impact factor: 5.469

4.  A new method for measuring scouring efficiency of natural fibers based on the cellulose-binding domain-beta-glucuronidase fused protein.

Authors:  Ofir Degani; Shimon Gepstein; Carlos G Dosoretz
Journal:  J Biotechnol       Date:  2004-02-05       Impact factor: 3.307

Review 5.  Selection of biologically active peptides by phage display of random peptide libraries.

Authors:  R Cortese; P Monaci; A Luzzago; C Santini; F Bartoli; I Cortese; P Fortugno; G Galfrè; A Nicosia; F Felici
Journal:  Curr Opin Biotechnol       Date:  1996-12       Impact factor: 9.740

6.  Role of scaffolding protein CipC of Clostridium cellulolyticum in cellulose degradation.

Authors:  S Pagès; L Gal; A Bélaïch; C Gaudin; C Tardif; J P Bélaïch
Journal:  J Bacteriol       Date:  1997-05       Impact factor: 3.490

7.  The binding pattern of two carbohydrate-binding modules of laminarinase Lam16A from Thermotoga neapolitana: differences in beta-glucan binding within family CBM4.

Authors:  Vladimir V Zverlov; Ilia Y Volkov; Galina A Velikodvorskaya; Wolfgang H Schwarz
Journal:  Microbiology       Date:  2001-03       Impact factor: 2.777

8.  Generation of metal-binding staphylococci through surface display of combinatorially engineered cellulose-binding domains.

Authors:  H Wernérus; J Lehtiö; T Teeri; P A Nygren; S Ståhl
Journal:  Appl Environ Microbiol       Date:  2001-10       Impact factor: 4.792

9.  Evaluation of chitosan-alginate-hyaluronate complexes modified by an RGD-containing protein as tissue-engineering scaffolds for cartilage regeneration.

Authors:  Shan-hui Hsu; Shu Wen Whu; Shu-Chih Hsieh; Ching-Lin Tsai; David Chanhen Chen; Tai-Sheng Tan
Journal:  Artif Organs       Date:  2004-08       Impact factor: 3.094

10.  Precise excision of the cellulose binding domains from two Cellulomonas fimi cellulases by a homologous protease and the effect on catalysis.

Authors:  N R Gilkes; R A Warren; R C Miller; D G Kilburn
Journal:  J Biol Chem       Date:  1988-07-25       Impact factor: 5.157

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  111 in total

1.  Structural and kinetic insights reveal that the amino acid pair Gln-228/Asn-254 modulates the transfructosylating specificity of Schwanniomyces occidentalis β-fructofuranosidase, an enzyme that produces prebiotics.

Authors:  Miguel Álvaro-Benito; M Angela Sainz-Polo; David González-Pérez; Beatriz González; Francisco J Plou; María Fernández-Lobato; Julia Sanz-Aparicio
Journal:  J Biol Chem       Date:  2012-04-16       Impact factor: 5.157

2.  Chimeric cellulase matrix for investigating intramolecular synergism between non-hydrolytic disruptive functions of carbohydrate-binding modules and catalytic hydrolysis.

Authors:  Yuguo Wang; Rentao Tang; Jin Tao; Xiaonan Wang; Baisong Zheng; Yan Feng
Journal:  J Biol Chem       Date:  2012-07-09       Impact factor: 5.157

3.  Enzymatic deconstruction of xylan for biofuel production.

Authors:  Dylan Dodd; Isaac K O Cann
Journal:  Glob Change Biol Bioenergy       Date:  2009-02-18       Impact factor: 4.745

4.  Novel carbohydrate-binding module identified in a ruminal metagenomic endoglucanase.

Authors:  Cheng-Jie Duan; Jun-Liang Liu; Xi Wu; Ji-Liang Tang; Jia-Xun Feng
Journal:  Appl Environ Microbiol       Date:  2010-05-14       Impact factor: 4.792

5.  Chimeric lactase capable of spontaneous and strong immobilization on cellulose and development of a continuous-flow system for lactose hydrolysis at high temperatures.

Authors:  G A Velikodvorskaya; T V Tikhonova; I D Gurvits; A S Karyagina; N V Lavrova; O V Sergienko; V N Tashlitskii; N A Lunina; V G Lunin
Journal:  Appl Environ Microbiol       Date:  2010-10-08       Impact factor: 4.792

6.  Characterization of Thermobifida fusca cutinase-carbohydrate-binding module fusion proteins and their potential application in bioscouring.

Authors:  Yao Zhang; Sheng Chen; Meng Xu; Artur Cavaco-Paulo; Artur Cavoco-Paulo; Jing Wu; Jian Chen
Journal:  Appl Environ Microbiol       Date:  2010-08-20       Impact factor: 4.792

Review 7.  Bacterial expansins and related proteins from the world of microbes.

Authors:  Nikolaos Georgelis; Nikolas Nikolaidis; Daniel J Cosgrove
Journal:  Appl Microbiol Biotechnol       Date:  2015-04-02       Impact factor: 4.813

8.  Overexpression of the carbohydrate binding module of strawberry expansin2 in Arabidopsis thaliana modifies plant growth and cell wall metabolism.

Authors:  Cristina F Nardi; Natalia M Villarreal; Franco R Rossi; Santiago Martínez; Gustavo A Martínez; Pedro M Civello
Journal:  Plant Mol Biol       Date:  2015-04-03       Impact factor: 4.076

9.  Characterization and homology modelling of a novel multi-modular and multi-functional Paenibacillus mucilaginosus glycoside hydrolase.

Authors:  Ntsoaki Leticia Mosina; Wolf-Dieter Schubert; Don A Cowan
Journal:  Extremophiles       Date:  2019-08-01       Impact factor: 2.395

10.  The Laforin-like dual-specificity phosphatase SEX4 from Arabidopsis hydrolyzes both C6- and C3-phosphate esters introduced by starch-related dikinases and thereby affects phase transition of alpha-glucans.

Authors:  Mahdi Hejazi; Joerg Fettke; Oliver Kötting; Samuel C Zeeman; Martin Steup
Journal:  Plant Physiol       Date:  2009-12-16       Impact factor: 8.340

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