Literature DB >> 16751271

Experimental and computational probes of the space in a self-assembled capsule.

Dariush Ajami1, Tetsuo Iwasawa, Julius Rebek.   

Abstract

Self-assembled capsules are hosts that recognize and surround smaller molecule guests of appropriate size, shape, and chemical surfaces. The space available inside is a cage of fixed solvent molecules, many of which are aromatic. These aromatics provide anisotropic shielding to guests, and a map of induced magnetic shielding for the inner space can be obtained through nucleus-independent chemical shift calculations. Experimental values of the magnetic environment can be determined by NMR spectra of the guests inside. We describe here the environment in a cylindrical capsule with tapered ends. A series of terminal acetylenes -- the narrowest of organic structures -- was synthesized and used to probe the magnetic shielding of the capsule's ends. Their NMR spectra showed that the acetylenic hydrogen experiences deshielding as it is forced deeper into the tapered end of the capsule where four benzene rings converge. Modeling and density functional theory calculations provided excellent agreement with the experimental values and established a molecular ruler to explore steric and magnetic environments inside the capsule.

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Year:  2006        PMID: 16751271      PMCID: PMC1482543          DOI: 10.1073/pnas.0602781103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  12 in total

1.  Amplification by compartmentalization.

Authors:  Jian Chen; Steffi Körner; Stephen L Craig; Dmitry M Rudkevich; Julius Rebek
Journal:  Nature       Date:  2002-01-24       Impact factor: 49.962

2.  Chemical amplification with encapsulated reagents.

Authors:  Jian Chen; Steffi Körner; Stephen L Craig; Shirley Lin; Dmitry M Rudkevich; Julius Rebek
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-05       Impact factor: 11.205

3.  Stereochemistry in self-assembled encapsulation complexes: constellational isomerism.

Authors:  Masamichi Yamanaka; Alexander Shivanyuk; Julius Rebek
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-23       Impact factor: 11.205

4.  Encapsulation induces helical folding of alkanes.

Authors:  Alessandro Scarso; Laurent Trembleau; Julius Rebek
Journal:  Angew Chem Int Ed Engl       Date:  2003-11-17       Impact factor: 15.336

5.  Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.

Authors:  A Nicholls; K A Sharp; B Honig
Journal:  Proteins       Date:  1991

6.  Hydrocarbon binding inside a hexameric pyrogallol[4]arene capsule.

Authors:  Liam C Palmer; Julius Rebek
Journal:  Org Lett       Date:  2005-03-03       Impact factor: 6.005

7.  A self-assembled cylindrical capsule: new supramolecular phenomena through encapsulation.

Authors:  S K Körner; F C Tucci; D M Rudkevich; T Heinz; J Rebek
Journal:  Chemistry       Date:  2000-01       Impact factor: 5.236

8.  Water-stabilized cavitands.

Authors:  Adel Rafai Far; Alexander Shivanyuk; Julius Rebek
Journal:  J Am Chem Soc       Date:  2002-03-27       Impact factor: 15.419

9.  Assembly of resorcinarene capsules in wet solvents.

Authors:  Alexander Shivanyuk; Julius Rebek
Journal:  J Am Chem Soc       Date:  2003-03-26       Impact factor: 15.419

10.  Helical folding of alkanes in a self-assembled, cylindrical capsule.

Authors:  Alessandro Scarso; Laurent Trembleau; Julius Rebek
Journal:  J Am Chem Soc       Date:  2004-10-20       Impact factor: 15.419

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  6 in total

1.  Molecular recognition and self-assembly special feature: Disproportionation and self-sorting in molecular encapsulation.

Authors:  Dariush Ajami; Jun-Li Hou; Trevor J Dale; Elizabeth Barrett; Julius Rebek
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-27       Impact factor: 11.205

2.  Supramolecular architecture with a cavitand-capsule chimera.

Authors:  Agustí Lledó; Seiji Kamioka; Aaron C Sather; Julius Rebek
Journal:  Angew Chem Int Ed Engl       Date:  2011-01-18       Impact factor: 15.336

3.  Guest packing motifs within a supramolecular nanocapsule and a covalent analogue.

Authors:  Simin Liu; David H Russell; Nathanael F Zinnel; Bruce C Gibb
Journal:  J Am Chem Soc       Date:  2013-03-12       Impact factor: 15.419

4.  Recognition and sequestration of ω-fatty acids by a cavitand receptor.

Authors:  Simone Mosca; Dariush Ajami; Julius Rebek
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-24       Impact factor: 11.205

5.  Recognition and organocatalysis with a synthetic cavitand receptor.

Authors:  Fernando R Pinacho Crisóstomo; Agustí Lledó; Siddhartha R Shenoy; Tetsuo Iwasawa; Julius Rebek
Journal:  J Am Chem Soc       Date:  2009-06-03       Impact factor: 15.419

6.  Ordered co-encapsulation of chloride with polar neutral guests in a tetraurea calix[4]pyrrole dimeric capsule.

Authors:  Albano Galán; Virginia Valderrey; Pablo Ballester
Journal:  Chem Sci       Date:  2015-07-20       Impact factor: 9.825

  6 in total

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