Literature DB >> 16739720

Chromosomal DNA replication in a soluble cell-free system derived from Xenopus eggs.

Antonin V Tutter1, Johannes C Walter.   

Abstract

Cytoplasmic egg extracts from the frog Xenopus laevis represent a powerful cell-free system to study eukaryotic chromosomal DNA replication. In the classical approach, sperm chromatin is added to unfractionated egg cytoplasm, leading to the assembly of transport-competent nuclei that undergo a single, complete round of DNA replication. The need for nuclei in this system has been circumvented. Sperm chromatin or plasmid DNA is first incubated with clarified egg cytoplasm to form chromatin-bound prereplication complexes. Subsequently, a highly concentrated nucleoplasmic extract is added that stimulates initiation from these prereplication complexes, and a single complete round of chromosomal DNA replication ensues. This review describes the preparation of the cytosolic and nucleoplasmic extracts, as well as their use in DNA replication, origin unwinding, and chromatin isolation assays.

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Year:  2006        PMID: 16739720     DOI: 10.1007/978-1-59745-000-3_9

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  22 in total

Review 1.  Regulation of maintenance DNA methylation via histone ubiquitylation.

Authors:  Atsuya Nishiyama; Luna Yamaguchi; Makoto Nakanishi
Journal:  J Biochem       Date:  2015-11-20       Impact factor: 3.387

2.  Analyzing the ATR-mediated checkpoint using Xenopus egg extracts.

Authors:  Patrick J Lupardus; Christopher Van; Karlene A Cimprich
Journal:  Methods       Date:  2007-02       Impact factor: 3.608

3.  Cohesin acetylation promotes sister chromatid cohesion only in association with the replication machinery.

Authors:  Jianhua Song; Andrea Lafont; Jingrong Chen; Frank M Wu; Katsuhiko Shirahige; Susannah Rankin
Journal:  J Biol Chem       Date:  2012-08-15       Impact factor: 5.157

4.  DNA Damage Response in Xenopus laevis Cell-Free Extracts.

Authors:  Tomas Aparicio Casado; Jean Gautier
Journal:  Methods Mol Biol       Date:  2021

Review 5.  Screening for small molecule inhibitors of embryonic pathways: sometimes you gotta crack a few eggs.

Authors:  Brian I Hang; Curtis A Thorne; David J Robbins; Stacey S Huppert; Laura A Lee; Ethan Lee
Journal:  Bioorg Med Chem       Date:  2011-12-30       Impact factor: 3.641

Review 6.  Chaperone-mediated chromatin assembly and transcriptional regulation in Xenopus laevis.

Authors:  Takashi Onikubo; David Shechter
Journal:  Int J Dev Biol       Date:  2016       Impact factor: 2.203

7.  Analysis of histones and chromatin in Xenopus laevis egg and oocyte extracts.

Authors:  Laura A Banaszynski; C David Allis; David Shechter
Journal:  Methods       Date:  2010-01-04       Impact factor: 3.608

8.  Continued primer synthesis at stalled replication forks contributes to checkpoint activation.

Authors:  Christopher Van; Shan Yan; W Matthew Michael; Shou Waga; Karlene A Cimprich
Journal:  J Cell Biol       Date:  2010-04-12       Impact factor: 10.539

9.  Reconstitution Of β-catenin degradation in Xenopus egg extract.

Authors:  Tony W Chen; Matthew R Broadus; Stacey S Huppert; Ethan Lee
Journal:  J Vis Exp       Date:  2014-06-17       Impact factor: 1.355

10.  Origin-dependent initiation of DNA replication within telomeric sequences.

Authors:  Isabel Kurth; Jean Gautier
Journal:  Nucleic Acids Res       Date:  2009-11-11       Impact factor: 16.971

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