Literature DB >> 16709091

Coarse-graining limits in open and wall-bounded dissipative particle dynamics systems.

Igor V Pivkin1, George E Karniadakis.   

Abstract

Coarse graining of dense liquid-state systems can potentially lead to fast simulation times, thus providing an effective bridge between atomistic and continuum descriptions. Dissipative particle dynamics (DPD) is a stochastic Lagrangian method that provides a simple formal procedure for coarse graining. Here we analyze some of the fundamental modeling ideas of DPD and identify three factors that limit its application at high coarse-graining levels: interparticle force magnitude, compressibility, and geometric confinement. These artifacts lead to erroneous transport properties of highly coarse-grained DPD systems and thus incorrect dynamics in simulating complex fluids, e.g., colloids and polymers.

Entities:  

Year:  2006        PMID: 16709091     DOI: 10.1063/1.2191050

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  3 in total

1.  Particle-based methods for multiscale modeling of blood flow in the circulation and in devices: challenges and future directions. Sixth International Bio-Fluid Mechanics Symposium and Workshop March 28-30, 2008 Pasadena, California.

Authors:  Takami Yamaguchi; Takuji Ishikawa; Y Imai; N Matsuki; Mikhail Xenos; Yuefan Deng; Danny Bluestein
Journal:  Ann Biomed Eng       Date:  2010-03       Impact factor: 3.934

2.  Coarse-grained simulations of the salt dependence of the radius of gyration of polyelectrolytes as models for biomolecules in aqueous solution.

Authors:  F Alarcón; G Pérez-Hernández; E Pérez; A Gama Goicochea
Journal:  Eur Biophys J       Date:  2013-05-31       Impact factor: 1.733

Review 3.  SWINGER: a clustering algorithm for concurrent coupling of atomistic and supramolecular liquids.

Authors:  Julija Zavadlav; Siewert J Marrink; Matej Praprotnik
Journal:  Interface Focus       Date:  2019-04-19       Impact factor: 3.906

  3 in total

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