| Literature DB >> 31065343 |
Julija Zavadlav1, Siewert J Marrink2, Matej Praprotnik3.
Abstract
In this contribution, we review recent developments and applications of a dynamic clustering algorithm SWINGER tailored for the multiscale molecular simulations of biomolecular systems. The algorithm on-the-fly redistributes solvent molecules among supramolecular clusters. In particular, we focus on its applications in combination with the adaptive resolution scheme, which concurrently couples atomistic and coarse-grained molecular representations. We showcase the versatility of our multiscale approach on a few applications to biomolecular systems coupling atomistic and supramolecular water models such as the well-established MARTINI and dissipative particle dynamics models and provide an outlook for future work.Entities:
Keywords: adaptive resolution; molecular dynamics; supramolecular coupling
Year: 2019 PMID: 31065343 PMCID: PMC6501350 DOI: 10.1098/rsfs.2018.0075
Source DB: PubMed Journal: Interface Focus ISSN: 2042-8898 Impact factor: 3.906