Literature DB >> 16680139

RNA synthetic biology.

Farren J Isaacs1, Daniel J Dwyer, James J Collins.   

Abstract

RNA molecules play important and diverse regulatory roles in the cell by virtue of their interaction with other nucleic acids, proteins and small molecules. Inspired by this natural versatility, researchers have engineered RNA molecules with new biological functions. In the last two years efforts in synthetic biology have produced novel, synthetic RNA components capable of regulating gene expression in vivo largely in bacteria and yeast, setting the stage for scalable and programmable cellular behavior. Immediate challenges for this emerging field include determining how computational and directed-evolution techniques can be implemented to increase the complexity of engineered RNA systems, as well as determining how such systems can be broadly extended to mammalian systems. Further challenges include designing RNA molecules to be sensors of intracellular and environmental stimuli, probes to explore the behavior of biological networks and components of engineered cellular control systems.

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Year:  2006        PMID: 16680139     DOI: 10.1038/nbt1208

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  127 in total

1.  Kinetic analysis of aptazyme-regulated gene expression in a cell-free translation system: modeling of ligand-dependent and -independent expression.

Authors:  Shungo Kobori; Norikazu Ichihashi; Yasuaki Kazuta; Tomoaki Matsuura; Tetsuya Yomo
Journal:  RNA       Date:  2012-06-25       Impact factor: 4.942

2.  Tracking, tuning, and terminating microbial physiology using synthetic riboregulators.

Authors:  Jarred M Callura; Daniel J Dwyer; Farren J Isaacs; Charles R Cantor; James J Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-16       Impact factor: 11.205

3.  Control design for sustained oscillation in a two-gene regulatory network.

Authors:  Roderick Edwards; Sehjeong Kim; P van den Driessche
Journal:  J Math Biol       Date:  2010-04-27       Impact factor: 2.259

4.  Computational approaches toward the design of pools for the in vitro selection of complex aptamers.

Authors:  Xuemei Luo; Maureen McKeague; Sylvain Pitre; Michel Dumontier; James Green; Ashkan Golshani; Maria C Derosa; Frank Dehne
Journal:  RNA       Date:  2010-09-24       Impact factor: 4.942

Review 5.  Foundations for the design and implementation of synthetic genetic circuits.

Authors:  Adrian L Slusarczyk; Allen Lin; Ron Weiss
Journal:  Nat Rev Genet       Date:  2012-05-18       Impact factor: 53.242

Review 6.  Biology by design: reduction and synthesis of cellular components and behaviour.

Authors:  Philippe Marguet; Frederick Balagadde; Cheemeng Tan; Lingchong You
Journal:  J R Soc Interface       Date:  2007-08-22       Impact factor: 4.118

7.  A computational proposal for designing structured RNA pools for in vitro selection of RNAs.

Authors:  Namhee Kim; Hin Hark Gan; Tamar Schlick
Journal:  RNA       Date:  2007-02-23       Impact factor: 4.942

8.  A high-throughput screen for synthetic riboswitches reveals mechanistic insights into their function.

Authors:  Sean A Lynch; Shawn K Desai; Hari Krishna Sajja; Justin P Gallivan
Journal:  Chem Biol       Date:  2007-02

Review 9.  Regulatory RNAs in bacteria.

Authors:  Lauren S Waters; Gisela Storz
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

10.  Thermodynamic basis for engineering high-affinity, high-specificity binding-induced DNA clamp nanoswitches.

Authors:  Andrea Idili; Kevin W Plaxco; Alexis Vallée-Bélisle; Francesco Ricci
Journal:  ACS Nano       Date:  2013-11-20       Impact factor: 15.881

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