Literature DB >> 16679373

Kinetic measurement of transient dimerization and dissociation reactions of Arabidopsis phototropin 1 LOV2 domain.

Yusuke Nakasone1, Takeshi Eitoku, Daisuke Matsuoka, Satoru Tokutomi, Masahide Terazima.   

Abstract

Photochemical reaction of a plant blue-light photoreceptor, Arabidopsis phototropin 1-LOV (light-oxygen-voltage sensing) domain 2, was studied with a view to the diffusion coefficients (D) using the pulsed-laser-induced transient grating method. Although the reaction dynamics completes at a rate of several microseconds as long as it is monitored by the absorption change, the diffusion coefficient was found to be time-dependent in a time range of submilliseconds to seconds. The observed signal can be analyzed by the two-state model, which includes the D-value decrease from D of the reactant (9.8 +/- 0.4) x 10(-11) m2/s to D of the product (8.0 +/- 0.4) x 10(-11) m2/s. The D-value of the reactant implies that the dominant form in the ground state of phototropin 1 LOV2 is the monomeric form in a concentration range of 50-200 microM. According to the Stokes-Einstein relationship, the D-change can be explained by a volume increase of 1.8 times. Furthermore, the rate of the D-change was roughly proportional to the concentration of the sample. These two observations indicate that the LOV2 domain transiently forms a dimer upon photoexcitation. When the sample concentration is increased (>180 microM), a new signal component appears within a few milliseconds. This signal represents a D increase from 8.0 x 10(-11) m2/s to 9.8 x 10(-11) m2/s with a time constant of 300 micros. The completely opposite D-change from that observed in a lower concentration, as well as the concentration dependence, implies that a dimer is formed in the ground state in a higher concentration range, even though the fraction of the dimer is still minor in this range. This dimer is photodissociated, with a time constant of 300 micros. This research clearly shows that the time-resolved diffusion measurement is a very powerful tool for detecting spectrally silent association/dissociation processes during chemical reactions. The photoreaction of the LOV2 domain is discussed.

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Year:  2006        PMID: 16679373      PMCID: PMC1483119          DOI: 10.1529/biophysj.106.084772

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  31 in total

1.  Dynamics of ANS binding to tuna apomyoglobin measured with fluorescence correlation spectroscopy.

Authors:  E Bismuto; E Gratton; D C Lamb
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

Review 2.  Phototropins 1 and 2: versatile plant blue-light receptors.

Authors:  Winslow R Briggs; John M Christie
Journal:  Trends Plant Sci       Date:  2002-05       Impact factor: 18.313

3.  The photocycle of a flavin-binding domain of the blue light photoreceptor phototropin.

Authors:  T E Swartz; S B Corchnoy; J M Christie; J W Lewis; I Szundi; W R Briggs; R A Bogomolni
Journal:  J Biol Chem       Date:  2001-07-06       Impact factor: 5.157

4.  Blue light-regulated molecular switch of Ser/Thr kinase in phototropin.

Authors:  Daisuke Matsuoka; Satoru Tokutomi
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-06       Impact factor: 11.205

5.  Disruption of the LOV-Jalpha helix interaction activates phototropin kinase activity.

Authors:  Shannon M Harper; John M Christie; Kevin H Gardner
Journal:  Biochemistry       Date:  2004-12-28       Impact factor: 3.162

6.  Structure of a flavin-binding plant photoreceptor domain: insights into light-mediated signal transduction.

Authors:  S Crosson; K Moffat
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-27       Impact factor: 11.205

7.  Arabidopsis NPH1: a protein kinase with a putative redox-sensing domain.

Authors:  E Huala; P W Oeller; E Liscum; I S Han; E Larsen; W R Briggs
Journal:  Science       Date:  1997-12-19       Impact factor: 47.728

8.  Comparative investigation of the LOV1 and LOV2 domains in Adiantum phytochrome3.

Authors:  Tatsuya Iwata; Dai Nozaki; Satoru Tokutomi; Hideki Kandori
Journal:  Biochemistry       Date:  2005-05-24       Impact factor: 3.162

9.  Structural basis of a phototropin light switch.

Authors:  Shannon M Harper; Lori C Neil; Kevin H Gardner
Journal:  Science       Date:  2003-09-12       Impact factor: 47.728

10.  On the reaction mechanism of adduct formation in LOV domains of the plant blue-light receptor phototropin.

Authors:  Erik Schleicher; Radoslaw M Kowalczyk; Christopher W M Kay; Peter Hegemann; Adelbert Bacher; Markus Fischer; Robert Bittl; Gerald Richter; Stefan Weber
Journal:  J Am Chem Soc       Date:  2004-09-08       Impact factor: 15.419

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  23 in total

1.  Light-induced conformational change and product release in DNA repair by (6-4) photolyase.

Authors:  Masato Kondoh; Kenichi Hitomi; Junpei Yamamoto; Takeshi Todo; Shigenori Iwai; Elizabeth D Getzoff; Masahide Terazima
Journal:  J Am Chem Soc       Date:  2011-01-27       Impact factor: 15.419

Review 2.  LOV domain-containing F-box proteins: light-dependent protein degradation modules in Arabidopsis.

Authors:  Shogo Ito; Young Hun Song; Takato Imaizumi
Journal:  Mol Plant       Date:  2012-03-08       Impact factor: 13.164

3.  Structural determinants underlying photoprotection in the photoactive orange carotenoid protein of cyanobacteria.

Authors:  Adjele Wilson; James N Kinney; Petrus H Zwart; Claire Punginelli; Sandrine D'Haene; François Perreau; Michael G Klein; Diana Kirilovsky; Cheryl A Kerfeld
Journal:  J Biol Chem       Date:  2010-04-05       Impact factor: 5.157

4.  Kinetics of conformational changes of the FKF1-LOV domain upon photoexcitation.

Authors:  Yusuke Nakasone; Kazunori Zikihara; Satoru Tokutomi; Masahide Terazima
Journal:  Biophys J       Date:  2010-12-01       Impact factor: 4.033

5.  Time-resolved detection of conformational changes in oat phytochrome A: time-dependent diffusion.

Authors:  Takeshi Eitoku; Xristo Zarate; Gennady V Kozhukh; Jeong-Il Kim; Pill-Soon Song; Masahide Terazima
Journal:  Biophys J       Date:  2006-08-25       Impact factor: 4.033

6.  Photoreverse reaction dynamics of octopus rhodopsin.

Authors:  Keiichi Inoue; Motoyuki Tsuda; Masahide Terazima
Journal:  Biophys J       Date:  2007-02-26       Impact factor: 4.033

7.  Conformational changes in the N-terminal region of photoactive yellow protein: a time-resolved diffusion study.

Authors:  Yuji Hoshihara; Yasushi Imamoto; Mikio Kataoka; Fumio Tokunaga; Masahide Terazima
Journal:  Biophys J       Date:  2007-11-16       Impact factor: 4.033

8.  Structural basis for light-dependent signaling in the dimeric LOV domain of the photosensor YtvA.

Authors:  Andreas Möglich; Keith Moffat
Journal:  J Mol Biol       Date:  2007-08-02       Impact factor: 5.469

9.  Time-resolved dimerization of a PAS-LOV protein measured with photocoupled small angle X-ray scattering.

Authors:  Jessica S Lamb; Brian D Zoltowski; Suzette A Pabit; Brian R Crane; Lois Pollack
Journal:  J Am Chem Soc       Date:  2008-08-21       Impact factor: 15.419

10.  Photoreactions of aureochrome-1.

Authors:  Tsuguyoshi Toyooka; Osamu Hisatomi; Fumio Takahashi; Hironao Kataoka; Masahide Terazima
Journal:  Biophys J       Date:  2011-06-08       Impact factor: 4.033

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