Literature DB >> 16672435

Development and evaluation of a loop-mediated isothermal amplification method for rapid diagnosis of Bordetella pertussis infection.

Kazunari Kamachi1, Hiromi Toyoizumi-Ajisaka, Kohei Toda, Sann Chan Soeung, Svay Sarath, Ya Nareth, Yoshinobu Horiuchi, Kazunobu Kojima, Motohide Takahashi, Yoshichika Arakawa.   

Abstract

We developed a loop-mediated isothermal amplification (LAMP) method to detect Bordetella pertussis infection. This LAMP assay detected B. pertussis with high sensitivity, but not other Bordetella species. Among nasopharyngeal swab samples from subjects with suspected pertussis, LAMP results showed a high level of agreement with results of conventional PCR. This method is a rapid, sensitive, and specific method for diagnosis of B. pertussis infection even in clinical laboratories with no specific equipment.

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Year:  2006        PMID： 16672435      PMCID： PMC1479160          DOI： 10.1128/JCM.44.5.1899-1902.2006

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  25 in total

1.  Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation.

Authors:  Y Mori; K Nagamine; N Tomita; T Notomi
Journal:  Biochem Biophys Res Commun       Date:  2001-11-23       Impact factor: 3.575

2.  Loop-mediated isothermal amplification reaction using a nondenatured template.

Authors:  K Nagamine; K Watanabe; K Ohtsuka; T Hase; T Notomi
Journal:  Clin Chem       Date:  2001-09       Impact factor: 8.327

3.  Impact of nasopharyngeal swab types on detection of Bordetella pertussis by PCR and culture.

Authors:  Joann L Cloud; Weston Hymas; Karen C Carroll
Journal:  J Clin Microbiol       Date:  2002-10       Impact factor: 5.948

4.  Comparison of real-time PCR and conventional hemi-nested PCR for the detection of Bordetella pertussis in nasopharyngeal samples.

Authors:  T P Anderson; K A Beynon; D R Murdoch
Journal:  Clin Microbiol Infect       Date:  2003-07       Impact factor: 8.067

5.  Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica.

Authors:  Julian Parkhill; Mohammed Sebaihia; Andrew Preston; Lee D Murphy; Nicholas Thomson; David E Harris; Matthew T G Holden; Carol M Churcher; Stephen D Bentley; Karen L Mungall; Ana M Cerdeño-Tárraga; Louise Temple; Keith James; Barbara Harris; Michael A Quail; Mark Achtman; Rebecca Atkin; Steven Baker; David Basham; Nathalie Bason; Inna Cherevach; Tracey Chillingworth; Matthew Collins; Anne Cronin; Paul Davis; Jonathan Doggett; Theresa Feltwell; Arlette Goble; Nancy Hamlin; Heidi Hauser; Simon Holroyd; Kay Jagels; Sampsa Leather; Sharon Moule; Halina Norberczak; Susan O'Neil; Doug Ormond; Claire Price; Ester Rabbinowitsch; Simon Rutter; Mandy Sanders; David Saunders; Katherine Seeger; Sarah Sharp; Mark Simmonds; Jason Skelton; Robert Squares; Steven Squares; Kim Stevens; Louise Unwin; Sally Whitehead; Bart G Barrell; Duncan J Maskell
Journal:  Nat Genet       Date:  2003-08-10       Impact factor: 38.330

6.  Real-time PCR assay targeting IS481 of Bordetella pertussis and molecular basis for detecting Bordetella holmesii.

Authors:  U Reischl; N Lehn; G N Sanden; M J Loeffelholz
Journal:  J Clin Microbiol       Date:  2001-05       Impact factor: 5.948

7.  Polymorphism in the pertussis toxin promoter region affecting the DNA-based diagnosis of Bordetella infection.

Authors:  M Nygren; E Reizenstein; M Ronaghi; J Lundeberg
Journal:  J Clin Microbiol       Date:  2000-01       Impact factor: 5.948

8.  Rapid and simple method for detecting the toxin B gene of Clostridium difficile in stool specimens by loop-mediated isothermal amplification.

Authors:  Haru Kato; Toshiyuki Yokoyama; Hideaki Kato; Yoshichika Arakawa
Journal:  J Clin Microbiol       Date:  2005-12       Impact factor: 5.948

9.  Loop-mediated isothermal amplification for direct detection of Mycobacterium tuberculosis complex, M. avium, and M. intracellulare in sputum samples.

Authors:  Tomotada Iwamoto; Toshiaki Sonobe; Kozaburo Hayashi
Journal:  J Clin Microbiol       Date:  2003-06       Impact factor: 5.948

10.  Diagnosis of community-acquired pertussis infection: comparison of both culture and fluorescent-antibody assays with PCR detection using electrophoresis or dot blot hybridization.

Authors:  Jairam R Lingappa; William Lawrence; Sheyla West-Keefe; Romesh Gautom; Brad T Cookson
Journal:  J Clin Microbiol       Date:  2002-08       Impact factor: 5.948
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  23 in total

Review 1.  Towards improved accuracy of Bordetella pertussis nucleic acid amplification tests.

Authors:  Michael Loeffelholz
Journal:  J Clin Microbiol       Date:  2012-03-21       Impact factor: 5.948

2.  Reverse transcription loop-mediated isothermal amplification for rapid detection of the newly emerged poultry Flavivirus.

Authors:  Zhaolong Li; Shaoying Chen; Shao Wang; Shilong Chen; Fengqian Lin
Journal:  Folia Microbiol (Praha)       Date:  2012-11-15       Impact factor: 2.099

3.  Polyethersulfone improves isothermal nucleic acid amplification compared to current paper-based diagnostics.

Authors:  J C Linnes; N M Rodriguez; L Liu; C M Klapperich
Journal:  Biomed Microdevices       Date:  2016-04       Impact factor: 2.838

Review 4.  Laboratory Diagnosis of Pertussis.

Authors:  Anneke van der Zee; Joop F P Schellekens; Frits R Mooi
Journal:  Clin Microbiol Rev       Date:  2015-10       Impact factor: 26.132

5.  Outbreaks of multidrug-resistant Pseudomonas aeruginosa in community hospitals in Japan.

Authors:  Jun-Ichiro Sekiguchi; Tsukasa Asagi; Tohru Miyoshi-Akiyama; Atsushi Kasai; Yukie Mizuguchi; Minako Araake; Tomoko Fujino; Hideko Kikuchi; Satoru Sasaki; Hajime Watari; Tadashi Kojima; Hiroshi Miki; Keiji Kanemitsu; Hiroyuki Kunishima; Yoshihiro Kikuchi; Mitsuo Kaku; Hiroshi Yoshikura; Tadatoshi Kuratsuji; Teruo Kirikae
Journal:  J Clin Microbiol       Date:  2006-11-22       Impact factor: 5.948

6.  Efficient identification of clinically relevant Candida yeast species by use of an assay combining panfungal loop-mediated isothermal DNA amplification with hybridization to species-specific oligonucleotide probes.

Authors:  João Inácio; Orfeu Flores; Isabel Spencer-Martins
Journal:  J Clin Microbiol       Date:  2007-12-12       Impact factor: 5.948

7.  Neonatal pertussis presenting as acute bronchiolitis: direct detection of the Bordetella pertussis genome using loop-mediated isothermal amplification.

Authors:  Akari Nakamura; Takashi Sakano; Tetsuo Nakayama; Hiroko Shimoda; Yasuyuki Okada; Ryuzo Hanayama; Katsuhiro Nomoto; Tetsushi Suto; Yoshihisa Kinoshita; Takeki Furue; Hiroaki Ono; Toshiyuki Ohta
Journal:  Eur J Pediatr       Date:  2008-06-06       Impact factor: 3.183

Review 8.  Protecting Newborns Against Pertussis: Treatment and Prevention Strategies.

Authors:  Abdulbaset M Salim; Yan Liang; Paul E Kilgore
Journal:  Paediatr Drugs       Date:  2015-12       Impact factor: 3.022

9.  Transmission of Bordetella holmesii during pertussis outbreak, Japan.

Authors:  Hajime Kamiya; Nao Otsuka; Yuka Ando; Fumito Odaira; Shuji Yoshino; Kimiko Kawano; Hirokazu Takahashi; Toshihide Nishida; Yoshio Hidaka; Hiromi Toyoizumi-Ajisaka; Keigo Shibayama; Kazunari Kamachi; Tomimasa Sunagawa; Kiyosu Taniguchi; Nobuhiko Okabe
Journal:  Emerg Infect Dis       Date:  2012-07       Impact factor: 6.883

10.  Pertussis outbreak in university students and evaluation of acellular pertussis vaccine effectiveness in Japan.

Authors:  Megumi Hara; Mami Fukuoka; Katsuya Tashiro; Iwata Ozaki; Satoko Ohfuji; Kenji Okada; Takashi Nakano; Wakaba Fukushima; Yoshio Hirota
Journal:  BMC Infect Dis       Date:  2015-02-06       Impact factor: 3.090
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