Literature DB >> 16614214

Atomic description of an enzyme reaction dominated by proton tunneling.

Laura Masgrau1, Anna Roujeinikova, Linus O Johannissen, Parvinder Hothi, Jaswir Basran, Kara E Ranaghan, Adrian J Mulholland, Michael J Sutcliffe, Nigel S Scrutton, David Leys.   

Abstract

We present an atomic-level description of the reaction chemistry of an enzyme-catalyzed reaction dominated by proton tunneling. By solving structures of reaction intermediates at near-atomic resolution, we have identified the reaction pathway for tryptamine oxidation by aromatic amine dehydrogenase. Combining experiment and computer simulation, we show proton transfer occurs predominantly to oxygen O2 of Asp(128)beta in a reaction dominated by tunneling over approximately 0.6 angstroms. The role of long-range coupled motions in promoting tunneling is controversial. We show that, in this enzyme system, tunneling is promoted by a short-range motion modulating proton-acceptor distance and no long-range coupled motion is required.

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Year:  2006        PMID: 16614214     DOI: 10.1126/science.1126002

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  60 in total

1.  Probing quantum and dynamic effects in concerted proton-electron transfer reactions of phenol-base compounds.

Authors:  Todd F Markle; Adam L Tenderholt; James M Mayer
Journal:  J Phys Chem B       Date:  2011-12-23       Impact factor: 2.991

2.  Taking Ockham's razor to enzyme dynamics and catalysis.

Authors:  David R Glowacki; Jeremy N Harvey; Adrian J Mulholland
Journal:  Nat Chem       Date:  2012-01-29       Impact factor: 24.427

3.  Good vibrations in enzyme-catalysed reactions.

Authors:  Sam Hay; Nigel S Scrutton
Journal:  Nat Chem       Date:  2012-01-29       Impact factor: 24.427

4.  Evidence that a 'dynamic knockout' in Escherichia coli dihydrofolate reductase does not affect the chemical step of catalysis.

Authors:  E Joel Loveridge; Enas M Behiry; Jiannan Guo; Rudolf K Allemann
Journal:  Nat Chem       Date:  2012-03-11       Impact factor: 24.427

5.  Elusive transition state of alcohol dehydrogenase unveiled.

Authors:  Daniel Roston; Amnon Kohen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-10       Impact factor: 11.205

6.  Three applications of path integrals: equilibrium and kinetic isotope effects, and the temperature dependence of the rate constant of the [1,5] sigmatropic hydrogen shift in (Z)-1,3-pentadiene.

Authors:  Tomáš Zimmermann; Jiří Vaníček
Journal:  J Mol Model       Date:  2010-04-30       Impact factor: 1.810

7.  Quantum physics meets biology.

Authors:  Markus Arndt; Thomas Juffmann; Vlatko Vedral
Journal:  HFSP J       Date:  2009-11-09

Review 8.  Multidimensional tunneling, recrossing, and the transmission coefficient for enzymatic reactions.

Authors:  Jingzhi Pu; Jiali Gao; Donald G Truhlar
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

9.  Conformational effects in enzyme catalysis: reaction via a high energy conformation in fatty acid amide hydrolase.

Authors:  Alessio Lodola; Marco Mor; Jolanta Zurek; Giorgio Tarzia; Daniele Piomelli; Jeremy N Harvey; Adrian J Mulholland
Journal:  Biophys J       Date:  2006-11-10       Impact factor: 4.033

10.  The effect of electrostatic shielding on H tunneling in R67 dihydrofolate reductase.

Authors:  Atsushi Yahashiri; Guy Nimrod; Nir Ben-Tal; Elizabeth E Howell; Amnon Kohen
Journal:  Chembiochem       Date:  2009-11-02       Impact factor: 3.164

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