Literature DB >> 16614073

Defocused orientation and position imaging (DOPI) of myosin V.

Erdal Toprak1, Joerg Enderlein, Sheyum Syed, Sean A McKinney, Rolfe G Petschek, Taekjip Ha, Yale E Goldman, Paul R Selvin.   

Abstract

The centroid of a fluorophore can be determined within approximately 1.5-nm accuracy from its focused image through fluorescence imaging with one-nanometer accuracy (FIONA). If, instead, the sample is moved away from the focus, the point-spread-function depends on both the position and 3D orientation of the fluorophore, which can be calculated by defocused orientation and position imaging (DOPI). DOPI does not always yield position accurately, but it is possible to switch back and forth between focused and defocused imaging, thereby getting the centroid and the orientation with precision. We have measured the 3D orientation and stepping behavior of single bifunctional rhodamine probes attached to one of the calmodulins of the light-chain domain (LCD) of myosin V as myosin V moves along actin. Concomitant with large and small steps, the LCD rotates and then dwells in the leading and trailing position, respectively. The probe angle relative to the barbed end of the actin (beta) averaged 128 degrees while the LCD was in the leading state and 57 degrees in the trailing state. The angular difference of 71 degrees represents rotation of LCD around the bound motor domain and is consistent with a 37-nm forward step size of myosin V. When beta changes, the probe rotates +/-27 degrees azimuthally around actin and then rotates back again on the next step. Our results remove degeneracy in angles and the appearance of nontilting lever arms that were reported.

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Year:  2006        PMID: 16614073      PMCID: PMC1458912          DOI: 10.1073/pnas.0507134103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  17 in total

1.  The gated gait of the processive molecular motor, myosin V.

Authors:  Claudia Veigel; Fei Wang; Marc L Bartoo; James R Sellers; Justin E Molloy
Journal:  Nat Cell Biol       Date:  2002-01       Impact factor: 28.824

2.  Three-dimensional structural dynamics of myosin V by single-molecule fluorescence polarization.

Authors:  Joseph N Forkey; Margot E Quinlan; M Alexander Shaw; John E T Corrie; Yale E Goldman
Journal:  Nature       Date:  2003-03-27       Impact factor: 49.962

3.  Direct observation of processive movement by individual myosin V molecules.

Authors:  T Sakamoto; I Amitani; E Yokota; T Ando
Journal:  Biochem Biophys Res Commun       Date:  2000-06-07       Impact factor: 3.575

4.  Step-size is determined by neck length in myosin V.

Authors:  Takeshi Sakamoto; Ahmet Yildez; Paul R Selvin; James R Sellers
Journal:  Biochemistry       Date:  2005-12-13       Impact factor: 3.162

5.  Myosin V is a left-handed spiral motor on the right-handed actin helix.

Authors:  M Yusuf Ali; Sotaro Uemura; Kengo Adachi; Hiroyasu Itoh; Kazuhiko Kinosita; Shin'ichi Ishiwata
Journal:  Nat Struct Biol       Date:  2002-06

6.  Role of the lever arm in the processive stepping of myosin V.

Authors:  Thomas J Purcell; Carl Morris; James A Spudich; H Lee Sweeney
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-17       Impact factor: 11.205

7.  Linearly polarized emission from colloidal semiconductor quantum rods.

Authors:  J Hu; W Yang; L Manna; A P Alivisatos
Journal:  Science       Date:  2001-05-03       Impact factor: 47.728

8.  Myosin V walks hand-over-hand: single fluorophore imaging with 1.5-nm localization.

Authors:  Ahmet Yildiz; Joseph N Forkey; Sean A McKinney; Taekjip Ha; Yale E Goldman; Paul R Selvin
Journal:  Science       Date:  2003-06-05       Impact factor: 47.728

9.  The prepower stroke conformation of myosin V.

Authors:  Stan Burgess; Matt Walker; Fei Wang; James R Sellers; Howard D White; Peter J Knight; John Trinick
Journal:  J Cell Biol       Date:  2002-12-23       Impact factor: 10.539

Review 10.  Myosin V motor proteins: marching stepwise towards a mechanism.

Authors:  Ronald D Vale
Journal:  J Cell Biol       Date:  2003-11-10       Impact factor: 10.539

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  71 in total

1.  Orientation of fluorescent lipid analogue BODIPY-PC to probe lipid membrane properties: insights from molecular dynamics simulations.

Authors:  Kevin C Song; Philip W Livanec; Jeffery B Klauda; Krzysztof Kuczera; Robert C Dunn; Wonpil Im
Journal:  J Phys Chem B       Date:  2011-04-22       Impact factor: 2.991

2.  Fluorescence microscopy for simultaneous observation of 3D orientation and movement and its application to quantum rod-tagged myosin V.

Authors:  Masashi Ohmachi; Yasunori Komori; Atsuko H Iwane; Fumihiko Fujii; Takashi Jin; Toshio Yanagida
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-19       Impact factor: 11.205

3.  Myosin VI lever arm rotation: fixed or variable?

Authors:  Yujie Sun; Harry W Schroeder; John F Beausang; Kazuaki Homma; Mitsuo Ikebe; Yale E Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-14       Impact factor: 11.205

4.  Counting tagged molecules one by one: Quantitative photoactivation and bleaching of photoactivatable fluorophores.

Authors:  Huong T Kratochvil; Dong G Ha; Martin T Zanni
Journal:  J Chem Phys       Date:  2015-09-14       Impact factor: 3.488

5.  Quantitative nanoscale imaging of orientational order in biological filaments by polarized superresolution microscopy.

Authors:  Cesar Augusto Valades Cruz; Haitham Ahmed Shaban; Alla Kress; Nicolas Bertaux; Serge Monneret; Manos Mavrakis; Julien Savatier; Sophie Brasselet
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-01       Impact factor: 11.205

6.  Myosin's mechanical ratchet.

Authors:  Robert A Cross
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-05       Impact factor: 11.205

7.  Two-state displacement by the kinesin-14 Ncd stalk.

Authors:  Mark A Hallen; Zhang-Yi Liang; Sharyn A Endow
Journal:  Biophys Chem       Date:  2011-01-13       Impact factor: 2.352

8.  Twirling of actin by myosins II and V observed via polarized TIRF in a modified gliding assay.

Authors:  John F Beausang; Harry W Schroeder; Philip C Nelson; Yale E Goldman
Journal:  Biophys J       Date:  2008-10-17       Impact factor: 4.033

9.  A random motility assay based on image correlation spectroscopy.

Authors:  Michael Prummer; Dorothee Kling; Vanessa Trefzer; Thilo Enderle; Sannah Zoffmann; Marco Prunotto
Journal:  Biophys J       Date:  2013-06-04       Impact factor: 4.033

10.  Single molecule optical measurements of orientation and rotations of biological macromolecules.

Authors:  Deborah Y Shroder; Lisa G Lippert; Yale E Goldman
Journal:  Methods Appl Fluoresc       Date:  2016-11-22       Impact factor: 3.009

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