Literature DB >> 21513278

Orientation of fluorescent lipid analogue BODIPY-PC to probe lipid membrane properties: insights from molecular dynamics simulations.

Kevin C Song1, Philip W Livanec, Jeffery B Klauda, Krzysztof Kuczera, Robert C Dunn, Wonpil Im.   

Abstract

Single-molecule fluorescence measurements have been used to characterize membrane properties, and recently showed a linear evolution of the fluorescent lipid analogue BODIPY-PC toward small tilt angles in Langmuir-Blodgett monolayers as the lateral surface pressure is increased. In this work, we have performed comparative molecular dynamics (MD) simulations of BODIPY-PC in DPPC (dipalmitoylphosphatidylcholine) monolayers and bilayers at three surface pressures (3, 10, and 40 mN/m) to explore (1) the microscopic correspondence between monolayer and bilayer structures, (2) the fluorophore's position within the membrane, and (3) the microscopic driving forces governing the fluorophore's tilting. The MD simulations reveal very close agreement between the monolayer and bilayer systems in terms of the fluorophore's orientation and lipid chain order, suggesting that monolayer experiments can be used to approximate bilayer systems. The simulations capture the trend of reduced tilt angle of the fluorophore with increasing surface pressure, as seen in the experimental results, and provide detailed insights into fluorophore location and orientation, not obtainable in the experiments. The simulations also reveal that the enthalpic contribution is dominant at 40 mN/m, resulting in smaller tilt angles of the fluorophore, and the entropy contribution is dominant at lower pressures, resulting in larger tilt angles.
© 2011 American Chemical Society

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Year:  2011        PMID: 21513278      PMCID: PMC3100582          DOI: 10.1021/jp109629v

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  41 in total

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Authors:  Mikhail Y Berezin; Samuel Achilefu
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2.  Measurement of single macromolecule orientation by total internal reflection fluorescence polarization microscopy.

Authors:  Joseph N Forkey; Margot E Quinlan; Yale E Goldman
Journal:  Biophys J       Date:  2005-05-13       Impact factor: 4.033

3.  An ab initio study on the torsional surface of alkanes and its effect on molecular simulations of alkanes and a DPPC bilayer.

Authors:  Jeffery B Klauda; Bernard R Brooks; Alexander D MacKerell; Richard M Venable; Richard W Pastor
Journal:  J Phys Chem B       Date:  2005-03-24       Impact factor: 2.991

4.  CHARMM-GUI: a web-based graphical user interface for CHARMM.

Authors:  Sunhwan Jo; Taehoon Kim; Vidyashankara G Iyer; Wonpil Im
Journal:  J Comput Chem       Date:  2008-08       Impact factor: 3.376

Review 5.  CHARMM: the biomolecular simulation program.

Authors:  B R Brooks; C L Brooks; A D Mackerell; L Nilsson; R J Petrella; B Roux; Y Won; G Archontis; C Bartels; S Boresch; A Caflisch; L Caves; Q Cui; A R Dinner; M Feig; S Fischer; J Gao; M Hodoscek; W Im; K Kuczera; T Lazaridis; J Ma; V Ovchinnikov; E Paci; R W Pastor; C B Post; J Z Pu; M Schaefer; B Tidor; R M Venable; H L Woodcock; X Wu; W Yang; D M York; M Karplus
Journal:  J Comput Chem       Date:  2009-07-30       Impact factor: 3.376

6.  Molecular structure of the lecithin ripple phase.

Authors:  Alex H de Vries; Serge Yefimov; Alan E Mark; Siewert J Marrink
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-04       Impact factor: 11.205

7.  Effect of chain length and unsaturation on elasticity of lipid bilayers.

Authors:  W Rawicz; K C Olbrich; T McIntosh; D Needham; E Evans
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

8.  Single-molecule probes of lipid membrane structure.

Authors:  Philip W Livanec; Robert C Dunn
Journal:  Langmuir       Date:  2008-12-16       Impact factor: 3.882

9.  The condensing effect of cholesterol in lipid bilayers.

Authors:  Wei-Chin Hung; Ming-Tao Lee; Fang-Yu Chen; Huey W Huang
Journal:  Biophys J       Date:  2007-03-16       Impact factor: 4.033

10.  Determination of the depth of BODIPY probes in model membranes by parallax analysis of fluorescence quenching.

Authors:  R D Kaiser; E London
Journal:  Biochim Biophys Acta       Date:  1998-10-15
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  8 in total

1.  Probing the orientational distribution of dyes in membranes through multiphoton microscopy.

Authors:  James E Reeve; Alex D Corbett; Igor Boczarow; Tony Wilson; Hagan Bayley; Harry L Anderson
Journal:  Biophys J       Date:  2012-09-05       Impact factor: 4.033

2.  β1-subunit-induced structural rearrangements of the Ca2+- and voltage-activated K+ (BK) channel.

Authors:  Juan P Castillo; Jorge E Sánchez-Rodríguez; H Clark Hyde; Cristian A Zaelzer; Daniel Aguayo; Romina V Sepúlveda; Louis Y P Luk; Stephen B H Kent; Fernando D Gonzalez-Nilo; Francisco Bezanilla; Ramón Latorre
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-23       Impact factor: 11.205

3.  Lipid-linked oligosaccharides in membranes sample conformations that facilitate binding to oligosaccharyltransferase.

Authors:  Nathan R Kern; Hui Sun Lee; Emilia L Wu; Soohyung Park; Kenno Vanommeslaeghe; Alexander D MacKerell; Jeffery B Klauda; Sunhwan Jo; Wonpil Im
Journal:  Biophys J       Date:  2014-10-21       Impact factor: 4.033

4.  Single molecule probes of membrane structure: orientation of BODIPY probes in DPPC as a function of probe structure.

Authors:  Kevin P Armendariz; Heath A Huckabay; Philip W Livanec; Robert C Dunn
Journal:  Analyst       Date:  2012-02-10       Impact factor: 4.616

5.  Structure-Property Relationships of Amphiphilic Nanoparticles That Penetrate or Fuse Lipid Membranes.

Authors:  Prabhani U Atukorale; Zekiye P Guven; Ahmet Bekdemir; Randy P Carney; Reid C Van Lehn; Dong Soo Yun; Paulo H Jacob Silva; Davide Demurtas; Yu-Sang Yang; Alfredo Alexander-Katz; Francesco Stellacci; Darrell J Irvine
Journal:  Bioconjug Chem       Date:  2018-02-27       Impact factor: 4.774

6.  Targeted fluorescence lifetime probes reveal responsive organelle viscosity and membrane fluidity.

Authors:  Ida Emilie Steinmark; Arjuna L James; Pei-Hua Chung; Penny E Morton; Maddy Parsons; Cécile A Dreiss; Christian D Lorenz; Gokhan Yahioglu; Klaus Suhling
Journal:  PLoS One       Date:  2019-02-14       Impact factor: 3.240

7.  Simple estimation of Förster Resonance Energy Transfer (FRET) orientation factor distribution in membranes.

Authors:  Luís M S Loura
Journal:  Int J Mol Sci       Date:  2012-11-19       Impact factor: 5.923

Review 8.  The Secret Lives of Fluorescent Membrane Probes as Revealed by Molecular Dynamics Simulations.

Authors:  Hugo A L Filipe; Maria João Moreno; Luís M S Loura
Journal:  Molecules       Date:  2020-07-28       Impact factor: 4.411

  8 in total

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