Literature DB >> 1660318

Effect of intermolecular orientation upon proton transfer within a polarizable medium.

S Scheiner1, X Duan.   

Abstract

Ab initio calculations are used to investigate the proton transfer process in bacteriorhodopsin. HN = CH2 serves as a small prototype of the Schiff base while HCOO- models its carboxylate-containing counterion and HO- the hydroxyl group of water of tyrosine, leading to the HCOO-..H+..NHCH2 and HO-..H+..NHCH2 complexes. In isolation, both complexes prefer a neutral pair configuration wherein the central proton is associated with the anion. However, the Schiff base may be protonated in the former complex, producing the HCOO-..+HNHCH2 ion pair, when there is a high degree of dielectric coupling with an external polarizable medium. Within a range of intermediate level coupling, the equilibrium position of the proton (on either the carboxylate or Schiff base) can be switched by suitable changes in the intermolecular angle. pK shift resulting from a 60 degrees reorientation are calculated to be some 5-12 pK U within the coupling range where proton transfers are possible. The energy barrier to proton transfer reinforces the ability of changes in angle and dielectric coupling to induce a proton transfer.

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Year:  1991        PMID: 1660318      PMCID: PMC1260138          DOI: 10.1016/S0006-3495(91)82121-X

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  16 in total

1.  Reaction field effects on proton transfer in the active site of actinidin.

Authors:  B T Thole; P T Van Duijnen
Journal:  Biophys Chem       Date:  1983-07       Impact factor: 2.352

2.  Early picosecond events in the photocycle of bacteriorhodopsin.

Authors:  H J Polland; M A Franz; W Zinth; W Kaiser; E Kölling; D Oesterhelt
Journal:  Biophys J       Date:  1986-03       Impact factor: 4.033

3.  Controlling the pKa of the bacteriorhodopsin Schiff base by use of artificial retinal analogues.

Authors:  M Sheves; A Albeck; N Friedman; M Ottolenghi
Journal:  Proc Natl Acad Sci U S A       Date:  1986-05       Impact factor: 11.205

Review 4.  Hydrogen bonding in globular proteins.

Authors:  E N Baker; R E Hubbard
Journal:  Prog Biophys Mol Biol       Date:  1984       Impact factor: 3.667

Review 5.  Proton transfer in the catalytic mechanism of carbonic anhydrase.

Authors:  D N Silverman; S H Vincent
Journal:  CRC Crit Rev Biochem       Date:  1983

6.  Environmental effects on H-bond potentials: A SCRF MO CNDO/2 study of some model systems.

Authors:  O Tapia; F Sussman; E Poulain
Journal:  J Theor Biol       Date:  1978-03-07       Impact factor: 2.691

7.  Ultraviolet-visible transient spectroscopy of bacteriorhodopsin mutants. Evidence for two forms of tyrosine-185----phenylalanine.

Authors:  M Duñach; S Berkowitz; T Marti; Y W He; S Subramaniam; H G Khorana; K J Rothschild
Journal:  J Biol Chem       Date:  1990-10-05       Impact factor: 5.157

8.  Role of aspartate-96 in proton translocation by bacteriorhodopsin.

Authors:  K Gerwert; B Hess; J Soppa; D Oesterhelt
Journal:  Proc Natl Acad Sci U S A       Date:  1989-07       Impact factor: 11.205

9.  The catalytic role of the active site aspartic acid in serine proteases.

Authors:  C S Craik; S Roczniak; C Largman; W J Rutter
Journal:  Science       Date:  1987-08-21       Impact factor: 47.728

10.  Functional role of aspartic acid-27 in dihydrofolate reductase revealed by mutagenesis.

Authors:  E E Howell; J E Villafranca; M S Warren; S J Oatley; J Kraut
Journal:  Science       Date:  1986-03-07       Impact factor: 47.728

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  8 in total

1.  Molecular dynamics study of the nature and origin of retinal's twisted structure in bacteriorhodopsin.

Authors:  E Tajkhorshid; J Baudry; K Schulten; S Suhai
Journal:  Biophys J       Date:  2000-02       Impact factor: 4.033

2.  Localization and orientation of functional water molecules in bacteriorhodopsin as revealed by polarized Fourier transform infrared spectroscopy.

Authors:  M Hatanaka; H Kandori; A Maeda
Journal:  Biophys J       Date:  1997-08       Impact factor: 4.033

3.  Estimated acid dissociation constants of the Schiff base, Asp-85, and Arg-82 during the bacteriorhodopsin photocycle.

Authors:  L S Brown; L Bonet; R Needleman; J K Lanyi
Journal:  Biophys J       Date:  1993-07       Impact factor: 4.033

4.  Gallium uptake by transferrin and interaction with receptor 1.

Authors:  Zohra Chikh; Nguyêt-Thanh Ha-Duong; Geneviève Miquel; Jean-Michel El Hage Chahine
Journal:  J Biol Inorg Chem       Date:  2006-09-19       Impact factor: 3.358

5.  Elucidating the exact role of engineered CRABPII residues for the formation of a retinal protonated Schiff base.

Authors:  Chrysoula Vasileiou; Wenjing Wang; Xiaofei Jia; Kin Sing Stephen Lee; Camille T Watson; James H Geiger; Babak Borhan
Journal:  Proteins       Date:  2009-12

6.  Relevance of Hydrogen Bonds for the Histamine H2 Receptor-Ligand Interactions: A Lesson from Deuteration.

Authors:  Mojca Kržan; Jan Keuschler; Janez Mavri; Robert Vianello
Journal:  Biomolecules       Date:  2020-01-29

7.  Decoupling of photo- and proton cycle in the Asp85-->Glu mutant of bacteriorhodopsin.

Authors:  J Heberle; D Oesterhelt; N A Dencher
Journal:  EMBO J       Date:  1993-10       Impact factor: 11.598

8.  Mechanism by which water and protein electrostatic interactions control proton transfer at the active site of channelrhodopsin.

Authors:  Suliman Adam; Ana-Nicoleta Bondar
Journal:  PLoS One       Date:  2018-08-07       Impact factor: 3.240

  8 in total

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