Literature DB >> 16602803

Synthetic analogues of the active site of the A-cluster of acetyl coenzyme A synthase/CO dehydrogenase: syntheses, structures, and reactions with CO.

Todd C Harrop1, Marilyn M Olmstead, Pradip K Mascharak.   

Abstract

Two metallosynthons, namely (Et4N)2[Ni(NpPepS)] (1) and (Et4N)2[Ni(PhPepS)] (2) containing carboxamido-N and thiolato-S as donors have been used to model the bimetallic M(p)-Ni(d) subsite of the A-cluster of the enzyme acetyl coenzyme A synthase/CO dehydrogenase. A series of sulfur-bridged Ni/Cu dinuclear and trinuclear complexes (3-10) have been synthesized to explore their redox properties and affinity of the metal centers toward CO. The structures of (Et4N)2[Ni(PhPepS)] (2), (Et4N)[Cu(neo)Ni(NpPepS)] x 0.5 Et2O x 0.5 H2O (3 x 0.5 Et2O x 0.5 H2O), (Et4N)[Cu(neo)Ni(PhPepS)] x H2O (4 x H2O), (Et4N)2[Ni{Ni(NpPepS)}2] x DMF (5 x DMF), (Et4N)2[Ni(DMF)2{Ni(NpPepS)}2] x 3 DMF (6 x 3 DMF), (Et4N)2[Ni(DMF)2{Ni(PhPepS)}2] (8), and [Ni(dppe)Ni(PhPepS)] x CH2Cl2 (10 x CH2Cl2) have been determined by crystallography. The Ni(d) mimics 1 and 2 resist reduction and exhibit no affinity toward CO. In contrast, the sulfur-bridged Ni center (designated Ni(C)) in the trinuclear models 5-8 are amenable to reduction and binds CO in the Ni(I) state. Also, the sulfur-bridged Ni(C) center can be removed from the trimers (5-8) by treatment with 1,10-phenanthroline much like the "labile Ni" from the enzyme. The dinuclear Ni-Ni models 9 and 10 resemble the Ni(p)-Ni(d) subsite of the A-cluster more closely, and only the modeled Ni(p) site of the dimers can be reduced. The Ni(I)-Ni(II) species display EPR spectra typical of a Ni(I) center in distorted trigonal bipyramidal and distorted tetrahedral geometries for 9(red) and 10(red), respectively. Both species bind CO, and the CO-adducts 9(red)-CO and 10(red)-CO display strong nu(co) at 2044 and 1997 cm(-1), respectively. The reduction of 10 is reversible. The CO-affinity of 10 in the reduced state and the nu(co) value of 10(red)-CO closely resemble the CO-bound reduced A-cluster (nu(co) = 1996 cm(-1)).

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16602803      PMCID: PMC4826277          DOI: 10.1021/ic0520465

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  43 in total

1.  Nickel in subunit beta of the acetyl-CoA decarbonylase/synthase multienzyme complex in methanogens. Catalytic properties and evidence for a binuclear Ni-Ni site.

Authors:  Simonida Gencic; David A Grahame
Journal:  J Biol Chem       Date:  2002-12-02       Impact factor: 5.157

Review 2.  Unraveling the structure and mechanism of acetyl-coenzyme A synthase.

Authors:  Eric L Hegg
Journal:  Acc Chem Res       Date:  2004-10       Impact factor: 22.384

3.  A quantum chemical study of the reaction mechanism of acetyl-coenzyme a synthase.

Authors:  Patricia Amara; Anne Volbeda; Juan Carlos Fontecilla-Camps; Martin J Field
Journal:  J Am Chem Soc       Date:  2005-03-02       Impact factor: 15.419

4.  Influence of Sulfur Metalation on the Accessibility of the Ni(II/I) Couple in [N,N'-Bis(2-mercaptoethyl)-1,5-diazacyclooctanato]nickel(II): Insight into the Redox Properties of [NiFe]-Hydrogenase.

Authors:  Ghezai Musie; Patrick J. Farmer; Thawatchai Tuntulani; Joseph H. Reibenspies; Marcetta Y. Darensbourg
Journal:  Inorg Chem       Date:  1996-04-10       Impact factor: 5.165

5.  Evidence that an iron-nickel-carbon complex is formed by reaction of CO with the CO dehydrogenase from Clostridium thermoaceticum.

Authors:  S W Ragsdale; H G Wood; W E Antholine
Journal:  Proc Natl Acad Sci U S A       Date:  1985-10       Impact factor: 11.205

6.  Rapid kinetic studies of acetyl-CoA synthesis: evidence supporting the catalytic intermediacy of a paramagnetic NiFeC species in the autotrophic Wood-Ljungdahl pathway.

Authors:  Javier Seravalli; Manoj Kumar; Stephen W Ragsdale
Journal:  Biochemistry       Date:  2002-02-12       Impact factor: 3.162

7.  Crystal structure of nitrile hydratase reveals a novel iron centre in a novel fold.

Authors:  W Huang; J Jia; J Cummings; M Nelson; G Schneider; Y Lindqvist
Journal:  Structure       Date:  1997-05-15       Impact factor: 5.006

Review 8.  Fe(III) and Co(III) centers with carboxamido nitrogen and modified sulfur coordination: lessons learned from nitrile hydratase.

Authors:  Todd C Harrop; Pradip K Mascharak
Journal:  Acc Chem Res       Date:  2004-04       Impact factor: 22.384

9.  Sulfur bridging interactions of cis-planar NiII-S2N2 coordination units with nickel(II), copper(I,II), zinc(II), and mercury(II): a library of bridging modes, including NiII(micro2-SR)2MI,II rhombs.

Authors:  P Venkateswara Rao; Sumit Bhaduri; Jianfeng Jiang; R H Holm
Journal:  Inorg Chem       Date:  2004-09-20       Impact factor: 5.165

10.  Computational studies on the A cluster of acetyl-coenzyme A synthase: geometric and electronic properties of the NiFeC species and mechanistic implications.

Authors:  Ralph P Schenker; Thomas C Brunold
Journal:  J Am Chem Soc       Date:  2003-11-19       Impact factor: 15.419

View more
  7 in total

1.  Bisamidate and mixed amine/amidate NiN2S2 complexes as models for nickel-containing acetyl coenzyme A synthase and superoxide dismutase: an experimental and computational study.

Authors:  Vaidyanathan Mathrubootham; Jason Thomas; Richard Staples; John McCraken; Jason Shearer; Eric L Hegg
Journal:  Inorg Chem       Date:  2010-06-21       Impact factor: 5.165

2.  X-ray Absorption Spectroscopy Reveals an Organometallic Ni-C Bond in the CO-Treated Form of Acetyl-CoA Synthase.

Authors:  Mehmet Can; Logan J Giles; Stephen W Ragsdale; Ritimukta Sarangi
Journal:  Biochemistry       Date:  2017-02-23       Impact factor: 3.162

3.  Tridentate N(2)S ligand from 2,2'-dithiodibenzaldehyde and N,N-dimethylethylenediamine: Synthesis, structure, and characterization of a Ni(II) complex with relevance to Ni Superoxide Dismutase.

Authors:  Joshua R Zimmerman; Bradley W Smucker; Ryan P Dain; Michael J Vanstipdonk; David M Eichhorn
Journal:  Inorganica Chim Acta       Date:  2011-07-15       Impact factor: 2.545

4.  Imidazole-containing (N3S)-Ni(II) complexes relating to nickel containing biomolecules.

Authors:  Roxanne M Jenkins; Michael L Singleton; Elky Almaraz; Joseph H Reibenspies; Marcetta Y Darensbourg
Journal:  Inorg Chem       Date:  2009-08-03       Impact factor: 5.165

Review 5.  Structure-function relationships of anaerobic gas-processing metalloenzymes.

Authors:  Juan C Fontecilla-Camps; Patricia Amara; Christine Cavazza; Yvain Nicolet; Anne Volbeda
Journal:  Nature       Date:  2009-08-13       Impact factor: 49.962

6.  Dinuclear nickel complexes modeling the structure and function of the acetyl CoA synthase active site.

Authors:  Mikinao Ito; Mai Kotera; Tsuyoshi Matsumoto; Kazuyuki Tatsumi
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-07       Impact factor: 11.205

Review 7.  Structure, function, and mechanism of the nickel metalloenzymes, CO dehydrogenase, and acetyl-CoA synthase.

Authors:  Mehmet Can; Fraser A Armstrong; Stephen W Ragsdale
Journal:  Chem Rev       Date:  2014-02-13       Impact factor: 60.622

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.