Literature DB >> 16599448

Copper cation interactions with biologically essential types of ligands: a computational DFT study.

Matej Pavelka1, Milan Simanek, Jirí Sponer, Jaroslav V Burda.   

Abstract

This work presents a systematic theoretical study on Cu(I) and Cu(II) cations in variable hydrogen sulfide-aqua-ammine ligand fields. These ligands model the biologically most common environment for Cu ions. Molecular structures of the complexes were optimized at the density functional theory (DFT) level. Subsequent thorough energy analyses revealed the following trends: (i) The ammine complexes are the most stable, followed by those containing the aqua and hydrogen sulfide ligands, which are characterized by similar stabilization energies. (ii) The most preferred Cu(I) coordination number is 2 in ammine or aqua ligand fields. A qualitatively different binding picture was obtained for complexes with H(2)S ligands where the 4-coordination is favored. (iii) The 4- and 5-coordinated structures belong to the most stable complexes for Cu(II), regardless of the ligand types. Vertical and adiabatic ionization potentials of Cu(I) complexes were calculated. Charge distribution (using the natural population analysis (NPA) method) and molecular orbital analyses were performed to elucidate the nature of bonding in the examined systems. The results provide in-depth insight into the Cu-binding properties and can be, among others, used for the calibration of bioinorganic force fields.

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Year:  2006        PMID: 16599448     DOI: 10.1021/jp056868z

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  2 in total

1.  Formation of chelate structure between His-Met dipeptide and diaqua-cisplatin complex; DFT/PCM computational study.

Authors:  Michal Maixner; Helio F Dos Santos; Jaroslav V Burda
Journal:  J Biol Inorg Chem       Date:  2018-02-08       Impact factor: 3.358

2.  Development and validation of a ReaxFF reactive force field for Cu cation/water interactions and copper metal/metal oxide/metal hydroxide condensed phases.

Authors:  Adri C T van Duin; Vyacheslav S Bryantsev; Mamadou S Diallo; William A Goddard; Obaidur Rahaman; Douglas J Doren; David Raymand; Kersti Hermansson
Journal:  J Phys Chem A       Date:  2010-09-09       Impact factor: 2.781

  2 in total

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