Literature DB >> 29423565

Formation of chelate structure between His-Met dipeptide and diaqua-cisplatin complex; DFT/PCM computational study.

Michal Maixner1, Helio F Dos Santos2, Jaroslav V Burda3.   

Abstract

Interaction of cisplatin in activated diaqua-form with His-Met dipeptide is explored using DFT approach with PCM model. First the conformation space of the dipeptide is explored to find the most stable structure (labeled 0683). Several functionals with double-zeta basis set are used for optimization and obtained order of conformers is confirmed by the CCSD(T) single-point calculations. Supermolecular model is used to determine reaction coordinate for the replacement of aqua ligands consequently by N-site of histidine and S-site of methionine and reversely. Despite the monoadduct of Pt-S(Met) is thermodynamically less stable this reaction passes substantially faster (by several orders of magnitude) than coordination of cisplatin to histidine. The consequent chelate formation occurs relatively fast with energy release up to 12 kcal mol-1.

Entities:  

Keywords:  Anticancer drug; Computational chemistry; Density functional theory; Heavy metal; Thermodynamics

Mesh:

Substances:

Year:  2018        PMID: 29423565     DOI: 10.1007/s00775-018-1536-x

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  56 in total

1.  Hydrolysis theory for cisplatin and its analogues based on density functional studies.

Authors:  Y Zhang; Z Guo; X Z You
Journal:  J Am Chem Soc       Date:  2001-09-26       Impact factor: 15.419

2.  Recognition of DNA modified by antitumor cisplatin by "latent" and "active" protein p53.

Authors:  Miroslav Fojta; Hana Pivonkova; Marie Brazdova; Lucie Kovarova; Emil Palecek; Sarka Pospisilova; Borivoj Vojtesek; Jana Kasparkova; Viktor Brabec
Journal:  Biochem Pharmacol       Date:  2003-04-15       Impact factor: 5.858

Review 3.  Recognition of cisplatin adducts by cellular proteins.

Authors:  M Kartalou; J M Essigmann
Journal:  Mutat Res       Date:  2001-07-01       Impact factor: 2.433

4.  How does cisplatin alter DNA structure? A molecular mechanics study on double-stranded oligonucleotides.

Authors:  J Kozelka; J C Chottard
Journal:  Biophys Chem       Date:  1990-04       Impact factor: 2.352

5.  Hydrolysis process of the second generation platinum-based anticancer drug cis-amminedichlorocyclohexylamineplatinum(II).

Authors:  Chuanbao Zhu; Johan Raber; Leif A Eriksson
Journal:  J Phys Chem B       Date:  2005-06-23       Impact factor: 2.991

6.  Structure and properties of the 5a,6-anhydrotetracycline-platinum(II) dichloride complex: a theoretical ab initio study.

Authors:  Hélio F Dos Santos; Bruna L Marcial; Carolina F De Miranda; Luiz Antônio S Costa; Wagner B De Almeida
Journal:  J Inorg Biochem       Date:  2006-06-12       Impact factor: 4.155

7.  Interactions of cisplatin and transplatin with proteins. Comparison of binding kinetics, binding sites and reactivity of the Pt-protein adducts of cisplatin and transplatin towards biological nucleophiles.

Authors:  Tal Peleg-Shulman; Yousef Najajreh; Dan Gibson
Journal:  J Inorg Biochem       Date:  2002-07-25       Impact factor: 4.155

8.  Activation barriers and rate constants for hydration of platinum and palladium square-planar complexes: an ab initio study.

Authors:  Jaroslav V Burda; Michal Zeizinger; Jerzy Leszczynski
Journal:  J Chem Phys       Date:  2004-01-15       Impact factor: 3.488

9.  Influence of the bridging ligand on the substitution behaviour of dinuclear Pt(II) complexes. An experimental and theoretical approach.

Authors:  Hakan Ertürk; Andreas Hofmann; Ralph Puchta; Rudi van Eldik
Journal:  Dalton Trans       Date:  2007-04-04       Impact factor: 4.390

10.  Comparison of the electronic properties, and thermodynamic and kinetic parameters of the aquation of selected platinum(II) derivatives with their anticancer IC50 indexes.

Authors:  Ondrej Bradác; Tomás Zimmermann; Jaroslav V Burda
Journal:  J Mol Model       Date:  2008-03-06       Impact factor: 1.810

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  1 in total

1.  From Preassociation to Chelation: A Survey of Cisplatin Interaction with Methionine at Molecular Level by IR Ion Spectroscopy and Computations.

Authors:  Roberto Paciotti; Davide Corinti; Philippe Maitre; Cecilia Coletti; Nazzareno Re; Barbara Chiavarino; Maria Elisa Crestoni; Simonetta Fornarini
Journal:  J Am Soc Mass Spectrom       Date:  2021-07-08       Impact factor: 3.109

  1 in total

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