Literature DB >> 16594628

Locked nucleic acid: high-affinity targeting of complementary RNA for RNomics.

S Kauppinen1, B Vester, J Wengel.   

Abstract

Locked nucleic acid (LNA) is a nucleic acid analog containing one or more LNA nucleotide monomers with a bicyclic furanose unit locked in an RNA-mimicking sugar conformation. This conformational restriction is translated into unprecedented hybridization affinity towards complementary single-stranded RNA molecules. That makes fully modified LNAs, LNA/DNA mixmers, or LNA/RNA mixmers uniquely suited for mimicking RNA structures and for RNA targeting in vitro or in vivo. The focus of this chapter is on LNA antisense, LNA-modified DNAzymes (LNAzymes), LNA-modified small interfering (si)RNA (siLNA), LNA-enhanced expression profiling by real-time RT-PCR and detection and analysis of microRNAs by LNA-modified probes.

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Year:  2006        PMID: 16594628      PMCID: PMC7120141          DOI: 10.1007/3-540-27262-3_21

Source DB:  PubMed          Journal:  Handb Exp Pharmacol        ISSN: 0171-2004


  60 in total

1.  Potent and nontoxic antisense oligonucleotides containing locked nucleic acids.

Authors:  C Wahlestedt; P Salmi; L Good; J Kela; T Johnsson; T Hökfelt; C Broberger; F Porreca; J Lai; K Ren; M Ossipov; A Koshkin; N Jakobsen; J Skouv; H Oerum; M H Jacobsen; J Wengel
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

2.  RNAi as random degradative PCR: siRNA primers convert mRNA into dsRNAs that are degraded to generate new siRNAs.

Authors:  C Lipardi; Q Wei; B M Paterson
Journal:  Cell       Date:  2001-11-02       Impact factor: 41.582

3.  LNAzymes: incorporation of LNA-type monomers into DNAzymes markedly increases RNA cleavage.

Authors:  Birte Vester; Lars Bo Lundberg; Mads D Sørensen; B Ravindra Babu; Stephen Douthwaite; Jesper Wengel
Journal:  J Am Chem Soc       Date:  2002-11-20       Impact factor: 15.419

4.  Asymmetry in the assembly of the RNAi enzyme complex.

Authors:  Dianne S Schwarz; György Hutvágner; Tingting Du; Zuoshang Xu; Neil Aronin; Phillip D Zamore
Journal:  Cell       Date:  2003-10-17       Impact factor: 41.582

Review 5.  MicroRNAs: genomics, biogenesis, mechanism, and function.

Authors:  David P Bartel
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

6.  RNA interference in mammalian cells by chemically-modified RNA.

Authors:  Dwaine A Braasch; Susan Jensen; Yinghui Liu; Kiran Kaur; Khalil Arar; Michael A White; David R Corey
Journal:  Biochemistry       Date:  2003-07-08       Impact factor: 3.162

7.  Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22.

Authors:  Dione Kampa; Jill Cheng; Philipp Kapranov; Mark Yamanaka; Shane Brubaker; Simon Cawley; Jorg Drenkow; Antonio Piccolboni; Stefan Bekiranov; Gregg Helt; Hari Tammana; Thomas R Gingeras
Journal:  Genome Res       Date:  2004-03       Impact factor: 9.043

8.  The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans.

Authors:  B J Reinhart; F J Slack; M Basson; A E Pasquinelli; J C Bettinger; A E Rougvie; H R Horvitz; G Ruvkun
Journal:  Nature       Date:  2000-02-24       Impact factor: 49.962

9.  Expanding the design horizon of antisense oligonucleotides with alpha-L-LNA.

Authors:  Miriam Frieden; Signe M Christensen; Nikolaj D Mikkelsen; Christoph Rosenbohm; Charlotte A Thrue; Majken Westergaard; Henrik F Hansen; Henrik Ørum; Troels Koch
Journal:  Nucleic Acids Res       Date:  2003-11-01       Impact factor: 16.971

10.  The sequence of the human genome.

Authors:  J C Venter; M D Adams; E W Myers; P W Li; R J Mural; G G Sutton; H O Smith; M Yandell; C A Evans; R A Holt; J D Gocayne; P Amanatides; R M Ballew; D H Huson; J R Wortman; Q Zhang; C D Kodira; X H Zheng; L Chen; M Skupski; G Subramanian; P D Thomas; J Zhang; G L Gabor Miklos; C Nelson; S Broder; A G Clark; J Nadeau; V A McKusick; N Zinder; A J Levine; R J Roberts; M Simon; C Slayman; M Hunkapiller; R Bolanos; A Delcher; I Dew; D Fasulo; M Flanigan; L Florea; A Halpern; S Hannenhalli; S Kravitz; S Levy; C Mobarry; K Reinert; K Remington; J Abu-Threideh; E Beasley; K Biddick; V Bonazzi; R Brandon; M Cargill; I Chandramouliswaran; R Charlab; K Chaturvedi; Z Deng; V Di Francesco; P Dunn; K Eilbeck; C Evangelista; A E Gabrielian; W Gan; W Ge; F Gong; Z Gu; P Guan; T J Heiman; M E Higgins; R R Ji; Z Ke; K A Ketchum; Z Lai; Y Lei; Z Li; J Li; Y Liang; X Lin; F Lu; G V Merkulov; N Milshina; H M Moore; A K Naik; V A Narayan; B Neelam; D Nusskern; D B Rusch; S Salzberg; W Shao; B Shue; J Sun; Z Wang; A Wang; X Wang; J Wang; M Wei; R Wides; C Xiao; C Yan; A Yao; J Ye; M Zhan; W Zhang; H Zhang; Q Zhao; L Zheng; F Zhong; W Zhong; S Zhu; S Zhao; D Gilbert; S Baumhueter; G Spier; C Carter; A Cravchik; T Woodage; F Ali; H An; A Awe; D Baldwin; H Baden; M Barnstead; I Barrow; K Beeson; D Busam; A Carver; A Center; M L Cheng; L Curry; S Danaher; L Davenport; R Desilets; S Dietz; K Dodson; L Doup; S Ferriera; N Garg; A Gluecksmann; B Hart; J Haynes; C Haynes; C Heiner; S Hladun; D Hostin; J Houck; T Howland; C Ibegwam; J Johnson; F Kalush; L Kline; S Koduru; A Love; F Mann; D May; S McCawley; T McIntosh; I McMullen; M Moy; L Moy; B Murphy; K Nelson; C Pfannkoch; E Pratts; V Puri; H Qureshi; M Reardon; R Rodriguez; Y H Rogers; D Romblad; B Ruhfel; R Scott; C Sitter; M Smallwood; E Stewart; R Strong; E Suh; R Thomas; N N Tint; S Tse; C Vech; G Wang; J Wetter; S Williams; M Williams; S Windsor; E Winn-Deen; K Wolfe; J Zaveri; K Zaveri; J F Abril; R Guigó; M J Campbell; K V Sjolander; B Karlak; A Kejariwal; H Mi; B Lazareva; T Hatton; A Narechania; K Diemer; A Muruganujan; N Guo; S Sato; V Bafna; S Istrail; R Lippert; R Schwartz; B Walenz; S Yooseph; D Allen; A Basu; J Baxendale; L Blick; M Caminha; J Carnes-Stine; P Caulk; Y H Chiang; M Coyne; C Dahlke; A Deslattes Mays; M Dombroski; M Donnelly; D Ely; S Esparham; C Fosler; H Gire; S Glanowski; K Glasser; A Glodek; M Gorokhov; K Graham; B Gropman; M Harris; J Heil; S Henderson; J Hoover; D Jennings; C Jordan; J Jordan; J Kasha; L Kagan; C Kraft; A Levitsky; M Lewis; X Liu; J Lopez; D Ma; W Majoros; J McDaniel; S Murphy; M Newman; T Nguyen; N Nguyen; M Nodell; S Pan; J Peck; M Peterson; W Rowe; R Sanders; J Scott; M Simpson; T Smith; A Sprague; T Stockwell; R Turner; E Venter; M Wang; M Wen; D Wu; M Wu; A Xia; A Zandieh; X Zhu
Journal:  Science       Date:  2001-02-16       Impact factor: 47.728

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  35 in total

Review 1.  MicroRNAs and their roles in osteoclast differentiation.

Authors:  Zhuying Xia; Chao Chen; Peng Chen; Hui Xie; Xianghang Luo
Journal:  Front Med       Date:  2011-12-27       Impact factor: 4.592

Review 2.  The non-coding road towards cardiac regeneration.

Authors:  James E Hudson; Enzo R Porrello
Journal:  J Cardiovasc Transl Res       Date:  2013-12       Impact factor: 4.132

3.  In situ Detection of MicroRNAs: The Art of MicroRNA Research in Human Diseases.

Authors:  Duo Zhang; Lixin Xie; Yang Jin
Journal:  J Cytol Histol       Date:  2015-05-23

4.  MicroRNAs as potential clinical biomarkers: emerging approaches for their detection.

Authors:  S K Srivastava; A Bhardwaj; S J Leavesley; W E Grizzle; S Singh; A P Singh
Journal:  Biotech Histochem       Date:  2013-01-07       Impact factor: 1.718

5.  ErbB3 ablation impairs PI3K/Akt-dependent mammary tumorigenesis.

Authors:  Rebecca S Cook; Joan T Garrett; Violeta Sánchez; Jamie C Stanford; Christian Young; Anindita Chakrabarty; Cammie Rinehart; Yixian Zhang; Yaming Wu; Lee Greenberger; Ivan D Horak; Carlos L Arteaga
Journal:  Cancer Res       Date:  2011-04-11       Impact factor: 12.701

6.  Fluorescence-based codetection with protein markers reveals distinct cellular compartments for altered MicroRNA expression in solid tumors.

Authors:  Lorenzo F Sempere; Meir Preis; Todd Yezefski; Haoxu Ouyang; Arief A Suriawinata; Asli Silahtaroglu; Jose R Conejo-Garcia; Sakari Kauppinen; Wendy Wells; Murray Korc
Journal:  Clin Cancer Res       Date:  2010-08-03       Impact factor: 12.531

7.  Long-range architecture in a viral RNA genome.

Authors:  Eva J Archer; Mark A Simpson; Nicholas J Watts; Rory O'Kane; Bangchen Wang; Dorothy A Erie; Alex McPherson; Kevin M Weeks
Journal:  Biochemistry       Date:  2013-04-25       Impact factor: 3.162

8.  MicroRNA expression profiling of the porcine developing brain.

Authors:  Agnieszka Podolska; Bogumil Kaczkowski; Peter Kamp Busk; Rolf Søkilde; Thomas Litman; Merete Fredholm; Susanna Cirera
Journal:  PLoS One       Date:  2011-01-06       Impact factor: 3.240

9.  Tumor-suppressive microRNAs in Lung cancer: diagnostic and therapeutic opportunities.

Authors:  Lorenzo F Sempere; Xi Liu; Ethan Dmitrovsky
Journal:  ScientificWorldJournal       Date:  2009-07-13

10.  DNA mimics for the rapid identification of microorganisms by fluorescence in situ hybridization (FISH).

Authors:  Laura Cerqueira; Nuno F Azevedo; Carina Almeida; Tatiana Jardim; Charles William Keevil; Maria J Vieira
Journal:  Int J Mol Sci       Date:  2008-10-20       Impact factor: 5.923

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