Literature DB >> 12431091

LNAzymes: incorporation of LNA-type monomers into DNAzymes markedly increases RNA cleavage.

Birte Vester1, Lars Bo Lundberg, Mads D Sørensen, B Ravindra Babu, Stephen Douthwaite, Jesper Wengel.   

Abstract

Incorporation of two alpha-L-LNA/LNA nucleotides into each of the two binding arms of a "10-23" DNAzyme has been accomplished and the RNA cleavage with these novel LNAzymes studied. In comparison with the unmodified DNAzyme, the LNAzymes show significantly improved cleavage of the phosphodiester backbone at the target nucleotide in a small RNA substrate (58n RNA) under single-turnover conditions. The LNAzymes show efficient multiple turnover. With the LNAzymes, efficient cleavage was accomplished also of a naturally occurring ribosomal RNA at a target site within a highly structured region. The reference DNAzyme was ineffective at cleaving the ribosomal RNA target.

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Year:  2002        PMID: 12431091     DOI: 10.1021/ja0276220

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  29 in total

1.  RNA cleaving '10-23' DNAzymes with enhanced stability and activity.

Authors:  Steffen Schubert; Deniz C Gül; Hans-Peter Grunert; Heinz Zeichhardt; Volker A Erdmann; Jens Kurreck
Journal:  Nucleic Acids Res       Date:  2003-10-15       Impact factor: 16.971

2.  NMR structure of an alpha-L-LNA:RNA hybrid: structural implications for RNase H recognition.

Authors:  Jakob T Nielsen; Paul C Stein; Michael Petersen
Journal:  Nucleic Acids Res       Date:  2003-10-15       Impact factor: 16.971

3.  NMR solution structure of a parallel LNA quadruplex.

Authors:  Antonio Randazzo; Veronica Esposito; Oliver Ohlenschläger; Ramadurai Ramachandran; Luciano Mayola
Journal:  Nucleic Acids Res       Date:  2004-06-04       Impact factor: 16.971

4.  Strong positional preference in the interaction of LNA oligonucleotides with DNA polymerase and proofreading exonuclease activities: implications for genotyping assays.

Authors:  Daniel A Di Giusto; Garry C King
Journal:  Nucleic Acids Res       Date:  2004-02-18       Impact factor: 16.971

Review 5.  Brothers in arms: DNA enzymes, short interfering RNA, and the emerging wave of small-molecule nucleic acid-based gene-silencing strategies.

Authors:  Ravinay Bhindi; Roger G Fahmy; Harry C Lowe; Colin N Chesterman; Crispin R Dass; Murray J Cairns; Edward G Saravolac; Lun-Quan Sun; Levon M Khachigian
Journal:  Am J Pathol       Date:  2007-08-23       Impact factor: 4.307

6.  Conformationally restricted nucleotides as a probe of structure-function relationships in RNA.

Authors:  Kristine R Julien; Minako Sumita; Po-Han Chen; Ite A Laird-Offringa; Charles G Hoogstraten
Journal:  RNA       Date:  2008-07-02       Impact factor: 4.942

Review 7.  Non-natural nucleic acids for synthetic biology.

Authors:  Daniel H Appella
Journal:  Curr Opin Chem Biol       Date:  2009-10-29       Impact factor: 8.822

8.  Chemical synthesis of LNA-2-thiouridine and its influence on stability and selectivity of oligonucleotide binding to RNA.

Authors:  Marta Carlucci; Elzbieta Kierzek; Anna Olejnik; Douglas H Turner; Ryszard Kierzek
Journal:  Biochemistry       Date:  2009-11-24       Impact factor: 3.162

9.  The crystal structure of an 'All Locked' nucleic acid duplex.

Authors:  André Eichert; Katja Behling; Christian Betzel; Volker A Erdmann; Jens P Fürste; Charlotte Förster
Journal:  Nucleic Acids Res       Date:  2010-06-08       Impact factor: 16.971

10.  Design of efficient DNAzymes against muscle AChR alpha-subunit cRNA in vitro and in HEK 293 cells.

Authors:  Amr Abdelgany; M Khabir Uddin; Matthew Wood; Kazunari Taira; David Beeson
Journal:  J RNAi Gene Silencing       Date:  2005-10-14
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